CI01000306_09081250_09087963 (LDLRAD2)


Basic Information

Item Value
gene id CI01000306_09081250_09087963
gene name LDLRAD2
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9081250 ~ 9088398 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_09081250_09087963.mRNA
ATGGACACAGTAAGATGCATTCAGCACCTGTCAGGATGGTTTGTTCTGTTCAGCTTAATGACACGCCAGAGTCACTCCATTGAGACAGTCAATGTGGTGGACTTCTGTGGACAGACGATACAGGGGGACGGCATGATTGTAAAGTCCCACCAAGAGTCCCGGAAGTACTACTTTGTCTCCATGGGAACAGATTGCCACCTCACCATGCAGTCTGCCACCCCCCGAGACAAGGTGCAGTTCTACTTCCGCTTCTTCCTGGTCTACAGCCTGCTTAGAGTGTCACCGCACAGCCCCCCACCCCTCTTCCCGGAATCACCCAGGGGGTCCTCTTCATCTGGCCCAACGCGGCCCGACCTGAGCTTGGAGCCAACCACCAGGGAGGGGCCAGAAGACCCCTGCCATGCTGGCTCTTACATCCAGTTCTATGATGGGAGGGATAAGTCCGCACCCCCAATTGGCCCTCCACTCTGTGGGAAGAGCCCTCCCCGACCGGTCTTGTCAACGGGCAAATTTCTAACTCTACGTCTTGTGACACGAGGAACTCAGCCGAGGGTGGACTTTGTTGGAGACTTCACTTCATTCAGGCTGGGTTTTAACCAATCGGAGTGCAGTGGACAGCCTTACTTCAACTGTCGGAATGGGAAGTGTATTCCCATGAGTCTGGTTTGTGCAGATGATAAAGGCATTGACAACTGTGGTGATGGCAGTGACTTAATCGATTACCCTGGTTGCAGTGGTCCTCTATCTACACCCAAGCCCCCGCAGCACCCTGTTACTCAGCCAGCACGGATGCTGAACGTGCCTACTCTGACAGTGTCCACTTTAAAGAACTGTGCCACTCCGAACGCAGTTCCTGATCCGGATTCTGTGACTGTCTTCCATTTCTCTGCTGGCGCTGTATGTGGTTCTGGGTGTGACGGCCGGCGGGGTTCTCACGTGCTGGTGCTGTTGGGCCCCTGGCTGGTTCCTGTGGCGAGTGAGTGTGTTTCGTTTCTTGCCCTGCTGCAACTCCTGCTGCGCGTCCTGCCAGCTCTGCGGGCGGAGCTGCTCGCAAAACAAGGACCACCGATTGGCTAAGGTTACACCAGAAGGAGCTGCAACACCTGTGTCTTCTACCACCACTGTGGCTGTGTAAATACACTCATCTGATGTAGCCTAGCTCCATAAAAGACTCATGATGGAGATACAGTTAGGAAGTGGTATAACAGTAGAAGTGTTTTTTTGTTGTTGTTGTTTTGTTTATTTTTTTGAAGAATTGCCAGGCGGTGGACTTTTTTCCACTGATATTTTTTGTTTTAAAAAATGAAAGAACATAATTCAACAAAATCTGCTATTTGTGATATGTATTTGATACTGGATCTGTGGAAACAACATGAGTTGAGATTTCTAGTTGGTTTCGCAAAGTGAAAAAGGAAAGAATTCCACTCTATATTACCTCAGTGGGATACAGCTAACACTAGGACAATCCAGCTTCAAAGGACTGGAAATATGTTTTATTATTAAAACTTTCCA

Function

symbol description
ldlrad2 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human LDLRAD2 (low density lipoprotein receptor class A domain containing 2).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_09081250_09087963.mRNA True 1512 mRNA 0.50 5 9081250 9088398

Neighbor

gene id symbol gene type direction distance location
CI01000306_09049143_09051379 CYB561D1 coding upstream 29402 9049143 ~ 9051848 (+)
CI01000306_09034546_09046916 ATXN7L2, ATXN7L2A coding upstream 34306 9034439 ~ 9046944 (+)
CI01000306_09021191_09031657 SYPL2A coding upstream 49593 9021059 ~ 9031657 (+)
CI01000306_08984163_08984476 NA coding upstream 96546 8984163 ~ 8984704 (+)
CI01000306_08973033_08975478 NA coding upstream 104442 8973033 ~ 8976808 (+)
CI01000306_09125548_09137714 NA coding downstream 36653 9125051 ~ 9137754 (+)
CI01000306_09141075_09152779 NA coding downstream 52504 9140902 ~ 9152819 (+)
CI01000306_09155525_09189777 NA coding downstream 66952 9155350 ~ 9190162 (+)
CI01000306_09195793_09213433 NA coding downstream 105819 9194217 ~ 9214865 (+)
CI01000306_09216004_09219290 NA coding downstream 127431 9215829 ~ 9219563 (+)
G435409 NA non-coding upstream 210373 8870560 ~ 8870877 (+)
G435408 NA non-coding upstream 210867 8870176 ~ 8870383 (+)
G435345 NA non-coding upstream 211426 8868477 ~ 8869824 (+)
G435407 NA non-coding upstream 219999 8861002 ~ 8861251 (+)
G435406 NA non-coding upstream 220372 8860662 ~ 8860878 (+)
G435438 NA non-coding downstream 657 9089055 ~ 9089347 (+)
G435446 NA non-coding downstream 30777 9119175 ~ 9119512 (+)
G435447 NA non-coding downstream 61522 9149920 ~ 9150238 (+)
G435451 NA non-coding downstream 70054 9176768 ~ 9177266 (+)
G434545 NA other upstream 1961391 7119317 ~ 7119859 (+)
G433724 NA other upstream 2951472 6108611 ~ 6129778 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other upstream 2973075 6106143 ~ 6108175 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other upstream 3094962 5975822 ~ 5986288 (+)
G432958 NA other upstream 3421081 5658928 ~ 5660169 (+)
CI01000306_09225597_09230504 NA other downstream 137167 9225512 ~ 9231333 (+)
CI01000306_09263755_09288503 NA other downstream 185501 9263589 ~ 9289035 (+)
G435590 NA other downstream 624451 9704707 ~ 9737144 (+)
CI01000306_09860935_09865155 SH2D5 other downstream 771815 9860480 ~ 9865724 (+)
G435639 NA other downstream 791522 9878664 ~ 9884919 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003601 ldlrad2 coding NC_007122.7 CM002895.2 36477481 ~ 36489816 (+)