CI01000306_09155525_09189777


Basic Information

Item Value
gene id CI01000306_09155525_09189777
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9155350 ~ 9190162 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_09155525_09189777.mRNA
TTATAAAAAAATGTTACATTTGCCCCAGATGTGCTGTCCATGTGGTCACATGATGTACGTTCATCTTCATAGAACTGTCTGCACAAAGTATTAAATGTTTCCTGTGGTCTAATGTGTTACTTCCTAATTCACACATTGTTTGAGACTCGTTCTGTCTCTTTTCTCACTCGCTGTAATGGAGTTGTTCATCTTCATTGCTTTTCAGCTTCTTATAGAGGTTCAGTCTTACACTCCTGGTGAACTCTTGACACGAATAGTGAACAGACAGCTGAGCTGTGATTATTCACTCAACACTGAACCTGAGATCAGATCACCGCGCAGTGAAACATACACCATCAGAGCTAGTGTTCACACTTCAACAGCTGAAACATGGTTTATAGTTTTGGTTTCCACTGGTGTTGGTGTCATTTTGACTGGATTCATCTGTCTGTGTCGGTTTGCAAGTAAAAAAAGAAGAAAACTATGGCATAAAGATCAGTATTTGATTCTTAGCACTAAAATGAGATCAATAACATCAGATGTGCACAGTCAAGAAATTGGTATGAGTTCTGGACCTGCAGAGACATATTCTCTGATCACTTCAGTACCAGCCACATCTCAGCCCATATCTGTGGGCCTCGAACACCCAGATTCCCACCAGGACAACACACCAGATCCCACAGAGACTTCCTCTTTCATTATGTCTGAAAATTCAATTTACCAGCCCTCAGATGTTTTGGTCAATTCTCAACAGAAACGGGGAAATACAAAGGAAAATAAGAATGTTTACCACCTGTACTGCACGATCCCTGACAAACCAGTTCACTCAAACGCAGCAGATCAAGTCTACAGTTTGCTCCTTATGAAAATTCACTCTTACATGTGCTACTTCCTAATTCATCCATTGTTTGAGTCTCATTTGTCTCTTTTCACATTCACTGTAATGGAGTTGTTCATCTTCATCGCTTTTCAGCTTCTTATGGAGGTTCAGTCTTACAAATCTCCTGCTGTAAAAGTATCTCCAGATGTCATAAGTGAGTCCAGCTTGGTGAAGATGATCTGTGAGGCACCAGCAGATGTTAGAGTAAATATGTGTAATTTCTACAGAAACAGCGAGAATATAAAAATCAGTCCATCATGTGAGCTCGATCTCACTGGTGCTGAAGTGCTCATATGGGCAGCTGTAAAATCACCTGTATCAGTCGACTTTAACTGCTTCTACCCAATACATGAGGGAGGCATTGATAAGCCATCATCTCATTCTCCTGCTGCCACAGTGACGGTTCTAGATCTTCCTCAGGCCATATTAACAACATCTGCTTCAGTTATTATGGAAACAGACACAGTTCAGCTGAGCTGTGAGAATACTGAAGATCTGAAGATGGAGATGTGTTTCTTTAACATAAATGGAAGAGACAGTAACTCAAAACAGAGCTCATCATGTCAGCTCTTTCTCACTGGATCTCAGATCAGTATTAGGTCAGGAGGTCAGAGTTCATCTGTAAGAATAACCTGCTTCTACACTGTGAAGAAGTCACAAGTTCAAAAACCATCTCCTCACTCTGATCCAGTGACAGTAACAGTCCAGATCTCGTGGCTTTCAGTAGTGCTGGTTTTCACTGGTGTTGGTTTATTTCTGTCTGGACTCATGGGATTCATCTGTCTCTGCCACTTTGACACTTCTTATGGAGGTTCAGTCTTACATTATAATAGCGATGATGTCCAGCCCATCATATCATGTGAAATACCACATTCAGTCAGAGCTGATTTCACCTGTCGTCTCTACACTGAGGATGATCTTCTGCACTCTCAGAAGAGACAGTCTGGAGAACGTCTTTGTATGTTTTATGTAACTCCTGGTGAACTCTTCACACGATCAGACAACAGACAGCTGAGCTGTGATTATTCACTCAACACTGAACCTGAGATCAGATCACCGCGCAGTGAAACATACACCATCAGAGGTCAAAAATCATCTCCTCACTCTGATCCAGTGCCAGTGACAGTCCAAATTTCAACAGAAACATCCACTCAGAAACCTTCACAAAGACAGAAACATTTTCAGCAACAACGGCTGTCAGTTCCACCACTGAAACCCCGACATCCACCAGAACTGAGTTCTGGACCTGCAGAGACATATTCTCTGATCACTTCTGTACCAGCCACATCTCAGCCCATATCTGTGGCTCCTTATGGAGGTTCAGTCTCACATAAATTCACAACTACTCAAACATCACACCTGCACTTTAAGGATCCCGCGTCAGACGTTTTTCTGACGTCACGACGCACGAGCGTCTTGAACTTTCTGCTCGAATCAATCTATTTTCTCGGACTGAAAGCTCTGATTTCATGTGCCCAAAATGATGATCCAAAATCTACAGTTCTGGATTTTGATGCTGACGAACTGACATATGAGTTCATCTACGTGGATGAGGCAGGCTTCAAAAAGGCGTCTGGGCCGTAACGTAGTTGGACAAAGGGCTGTTGTAAATGTCCCTGGGCAGCGTGGGGGAAATATCACCACACAAGGCGATATTTTCCCCGATGCCTAGCCCGCGAGGACATCGCCTGTGATGTTGACGAGGTCTTGTGGCCAGATCCGAACAGAAGGCGGGATCCATAACACACACATAAAACAAGTATGTTTTTTTCCCCCAATAGCAATTTATCCAGTAATAGTTTTGTTGTTGTTTTTTTTTTACTTTTGTTTTGTTGCTAAATTTGATGATTTGTGATTCTATTTTTCTTTATTTCTGTAAGAATGTTTGTTTTTTGTAAAAACTCTTGTTTGATTACTGCAGAAATTCTACTTTTGAGTTTTACAGAAGACTGAGTCTGAGAAAATGACA

Function

NR:

description
hypothetical protein cypCar_00049007, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_09155525_09189777.mRNA False 2828 mRNA 0.42 25 9155350 9190162

Neighbor

gene id symbol gene type direction distance location
CI01000306_09141075_09152779 NA coding upstream 2531 9140902 ~ 9152819 (+)
CI01000306_09125548_09137714 NA coding upstream 17596 9125051 ~ 9137754 (+)
CI01000306_09081250_09087963 LDLRAD2 coding upstream 66952 9081250 ~ 9088398 (+)
CI01000306_09049143_09051379 CYB561D1 coding upstream 103502 9049143 ~ 9051848 (+)
CI01000306_09034546_09046916 ATXN7L2, ATXN7L2A coding upstream 108406 9034439 ~ 9046944 (+)
CI01000306_09195793_09213433 NA coding downstream 4055 9194217 ~ 9214865 (+)
CI01000306_09216004_09219290 NA coding downstream 25667 9215829 ~ 9219563 (+)
CI01000306_09225597_09230504 NA coding downstream 35350 9225512 ~ 9231333 (+)
CI01000306_09248061_09260369 NA coding downstream 57635 9247797 ~ 9260408 (+)
CI01000306_09263755_09288503 NA coding downstream 73427 9263589 ~ 9289035 (+)
G435446 NA non-coding upstream 35838 9119175 ~ 9119512 (+)
G435438 NA non-coding upstream 66003 9089055 ~ 9089347 (+)
G435409 NA non-coding upstream 284473 8870560 ~ 8870877 (+)
G435408 NA non-coding upstream 284967 8870176 ~ 8870383 (+)
G435345 NA non-coding upstream 285526 8868477 ~ 8869824 (+)
CI01000306_09296908_09305617 NA non-coding downstream 115783 9296809 ~ 9306977 (+)
G435554 NA non-coding downstream 246383 9436545 ~ 9480093 (+)
G434545 NA other upstream 2035491 7119317 ~ 7119859 (+)
G433724 NA other upstream 3025572 6108611 ~ 6129778 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other upstream 3047175 6106143 ~ 6108175 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other upstream 3169062 5975822 ~ 5986288 (+)
G432958 NA other upstream 3495181 5658928 ~ 5660169 (+)
G435590 NA other downstream 522687 9704707 ~ 9737144 (+)
CI01000306_09860935_09865155 SH2D5 other downstream 670051 9860480 ~ 9865724 (+)
G435639 NA other downstream 689758 9878664 ~ 9884919 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003605 CR457444.5 non-coding NC_007122.7 CM002895.2 36541551 ~ 36547269 (+)
eurasian perch (Perca fluviatilis) G128962 NA non-coding NC_053123.1 CM020920.1 34496156 ~ 34576920 (-)
mexican tetra (Astyanax mexicanus) G128388 NA non-coding NC_035911.1 CM008314.1 595074 ~ 595835 (-)