CI01000306_09860935_09865155 (SH2D5)


Basic Information

Item Value
gene id CI01000306_09860935_09865155
gene name SH2D5
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9860480 ~ 9865724 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_09860935_09865155.mRNA
ATGGGTGAGACAGCTGGCAGGGAACATGGGATTGTTACAAGATCTGCTGAGTATATTGGCTCATTTCCTGTGGATGACAGTTGTTTGGATGATCAGATTCAGCAGCTGCACACTCAGCTGAAGTCTCTTAAGATTATTATTGAACGTCTGTATCTGCAGAACTGCAAGAGCAAGCGAACAGTCTCATTGAGATTCTCTGTCAAAGGAGTCAAAGTTTATGATGAAGATGAAAAGACGCTCCTCATGGCTCATGCCATGTGTCGAGTCTCGCTGTCCACCGCCCGTCCGTCTGATGCTCAGTTTGCCTTTGTCTCCCATAATCCTGGAAATTCTGATGCCCAGCTCTATTGCCACCTCTTCAGAGCCAGACATGCCCGAGCTGCCCAGTTCCTGAACCTGCTGCTTTGCCGCTGTTTTCAACTGTATTTTCTGGAGAAGCACCCAGAGGAAGCTCAGGATGAGTGTTCGGAGGAGAAACCAACTCGAAAACCATCGCTGCTTAATCAAGGATTCCCTCTCAGTGTCAGCGCCTTGGTATCTTTCCGCAGGGCCCCAACTCAAGGCCTGCTACCAGGGGCAAAGAAAAGGAACAAGCCAGTGCAAACGCATGCAAGTCTCGAGCTCCCACTTTGTCAGAGACAGAAGAAGCTCTGGCTCAAGCTGTGTGGTGCTGGGCTGGCGTGTCTAGGTCAGTATTGGTGCACAGTGGCACTGCTGTCAAGCACCTGTAGTTCCTCACTCCTGGAAGATGATGCCTTGGGTGCCTTCCTCCTATGTCCTCATCCAAAAAAGCCCAACCGTGGGTCTCTTATAGTCCGCTTCCCATCAGGACTGGTGACTCATGCTATTAAGAATTCCAAGGGGAAGTTCCGCCTTGAGAAGTGCCACAATGACTTCGAAAGCCTTGCTGCTTTAATCGAGCACTACACCGAGTTCAGTGAGGAGCTGGAATGTTCTCTGAGCTGTGCCCGCGTCAATCACTCTTACGATTGGGAAGAGATTGTCAATAAGAGTTCACGTTCACCACAGGACAACAAGAAAGGCCCATTTAAGAATCACAGTTGGGTTTGAATCCTCTTTCATGCTCTGTGGTTTTTTTATTTTTTATTTATTTATTTTATACTACATATTTTACTTGGTTTTAACCATTACAGAGCTGCTGACATATTA
>TU500059
CCACCCTGCCAGGTTCAGTCGCGCGGACTAATGTTTGTGAGTTTGTAGGCTATTTCGTCTGTCTTTCTTTGCTACTATTACAACCACTTTCTGGATCCTTATGGTATTATTCAAGCGTTAATTATTAAAGCGTTGGTTTGATTTCTATTTGAGTCTTTCGCTTTTCGTGGAAACTGGCTGTGTCTCAAACATACTTTTATTTTGGCCGTTATTGGCAGGTTGCTGTAGGCAGCTCGTTGAGTTTTGCGTAACTGTATCTGTTTATCTTTGAGGAATGTGGGGGTTTACTTTCACTACTTGTACTGTGCTGTTATTCGTGAAGTTAAAAAGTTGAAGGAGTTTGTAATGCAGTTCTAAATTATTATTTTTGGCAAACGTGCTGACTTCTGTTTTTCCATTCGTTTTATTATTATTTTGAATAGTAGATAAAGCAAACACCAGGCTCAGACTGAGATATGGGTGAGACAGCTGGCAGGGAACATGGGATTGTTACAAGATCTGCTGAGTATATTGGCTCATTTCCTGTGGATGACAGTTGTTTGGATGATCAGATTCAGCAGCTGCACACTCAGCTGAAGTCTCTTAAGAACTGCAAGAGCAAGCGAACAGTCTCATTGAGATTCTCTGTCAAAGGAGTCAAAGTTTATGATGAAGATGAAAAGACGCTCCTCATGGCTCATGCCATGTGTCGAGTCTCGCTGTCCACCGCCCGTCCGTCTGATGCTCAGTTTGCCTTTGTCTCCCATAATCCTGGAAATTCTGATGCCCAGCTCTATTGCCACCTCTTCAGAGCCAGACATGCCCGAGCTGCCCAGTTCCTGAACCTGCTGCTTTGCCGCTGTTTTCAACTGTATTTTCTGGAGAAGCACCCAGAGGAAGCTCAGGATGAGTGTTCGGAGGAGAAACCAACTCGAAAACCATCGCTGCTTAATCAAGGATTCCCTCTCAGTGTCAGCGCCTTGGTATCTTTCCGCAGGGCCCCAACTCAAGGCCTGCTACCAGGGGCAAAGGTTTGTT
>TU500067
GAAAAGGAACAAGCCAGTGCAAACGCATGCAAGTCTCGAGCTCCCACTTTGTCAGAGACAGAAGAAGCTCTGGCTCAAGCTGTGTGGTGCTGGGCTGGCGTGTCTAGCACCTGTAGTTCCTCACTCCTGGAAGATGATGCCTTGGGTGCCTTCCTCCTATGTCCTCATCCAAAAAAGCCCAACCGTGGGTCTCTTATAGTCCGCTTCCCATCAGGACTGGTGACTCATGCTATTAAGAATTCCAAGGGGAAGTTCCGCCTTGAGAAGTGCCACAATGACTTCGAAAGCCTTGCTGCTTTAATCGAGCACTACACCGAGTTCAGTGAGGAGCTGGAATGTTCTCTGAGCTGTGCCCGCGTCAATCACTCTTACGATTGGGAAGAGATTGTCAATAAGAGTTCACGTTCACCACAGGACAACAAGAAAGGCCCATTTAAGAATCACAGTTGGGTTTGAATCCTCTTTCATGCTCTGTGGTTTTTTTATTTTTTATTTATTTATTTTATACTACATATTTTACTTGGTTTTAACCATTACAGAGCTGCTGACATATTAGTAAACCTTCCTAACCAGGATCTTAGTCACTGGCACTTTTTTTTTTTTTATATATATTTTGAATGGACACTTTGTTTTTGCCTGTTGACAATAACCTCAACCTTCTAAAGCACTCACTTTGTTGGTTTGTTTGGTTTAATTTTCTTTTCTAGGGAAAGAGGCACTTATGTTTTTCATGTAAATGTCAGATTTAAATGTATACGCAACTTTTTTTGTTTTTTGTTTTTTGTGCAAAGATGCATACTTATATCTGTACCCTTTATTATGTCTCTAAAATTCTGTTGTATGTTTTTATATTGCTTTAGGCCTTTTTACACTCTTGGTCATATATTATCACCTGTTTTAGAAAGAAATTTTCCACTACCAAGTTAATGGCTTTGCTGTTTTAATATTTTTACCTCCTGCACATATCACCTCTTAAATACACACATTTTCTGTTATTAGTATTGCATCAGTGTAAATGAAGTGTC

Function

symbol description
sh2d5 Predicted to be active in postsynaptic density. Orthologous to human SH2D5 (SH2 domain containing 5).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_09860935_09865155.mRNA False 1170 mRNA 0.48 8 9860935 9865254
TU500059 False 1017 TUCP 0.45 5 9860480 9863189
TU500067 True 1025 lncRNA 0.39 3 9864146 9865724

Neighbor

gene id symbol gene type direction distance location
CI01000306_09851578_09857742 HP1BP3 coding upstream 2383 9851227 ~ 9858552 (+)
CI01000306_09674684_09680504 CRELD1 coding upstream 180262 9672775 ~ 9680673 (+)
CI01000306_09656951_09671072 NA coding upstream 189169 9655395 ~ 9671766 (+)
CI01000306_09625036_09626067 NA coding upstream 233994 9624960 ~ 9626941 (+)
CI01000306_09559074_09602026 NA coding upstream 258689 9558978 ~ 9602246 (+)
CI01000306_09866302_09875270 KIF17 coding downstream 1048 9866302 ~ 9875717 (+)
CI01000306_09891658_09893015 SNRPE coding downstream 26404 9891532 ~ 9893239 (+)
CI01000306_09922070_09935786 SOX13 coding downstream 56816 9922070 ~ 9936407 (+)
CI01000306_09971328_09977478 NA coding downstream 106074 9971328 ~ 9977752 (+)
CI01000306_10078014_10104625 NA coding downstream 212302 10077556 ~ 10105147 (+)
G435609 NA non-coding upstream 112106 9745834 ~ 9748829 (+)
G435590 NA non-coding upstream 143321 9704707 ~ 9737144 (+)
G435589 NA non-coding upstream 162610 9697429 ~ 9698325 (+)
G435540 NA non-coding upstream 257539 9602427 ~ 9603396 (+)
G435554 NA non-coding upstream 380842 9436545 ~ 9480093 (+)
G435637 NA non-coding downstream 12386 9877640 ~ 9877881 (+)
G435639 NA non-coding downstream 13410 9878664 ~ 9884919 (+)
G435660 NA non-coding downstream 31740 9896994 ~ 9897394 (+)
G435661 NA non-coding downstream 32606 9897860 ~ 9898223 (+)
G435663 NA non-coding downstream 38695 9903949 ~ 9904587 (+)
CI01000306_09263755_09288503 NA other upstream 575606 9263589 ~ 9289035 (+)
CI01000306_09225597_09230504 NA other upstream 634429 9225512 ~ 9231333 (+)
G434545 NA other upstream 2741076 7119317 ~ 7119859 (+)
G433724 NA other upstream 3731157 6108611 ~ 6129778 (+)
G436932 NA other downstream 1217734 11082988 ~ 11098376 (+)
G437030 NA other downstream 1404504 11269758 ~ 11271160 (+)
CI01000306_09860935_09865155 SH2D5 other upstream 957 9860480 ~ 9865724 (+)

Expression


Co-expression Network