CI01000306_09891658_09893015 (SNRPE)


Basic Information

Item Value
gene id CI01000306_09891658_09893015
gene name SNRPE
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 9891532 ~ 9893239 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_09891658_09893015.mRNA
ATGGCGTACAGAGGACAAGGACAGAAGGTTCAGAAGCGTTCTCGAATCCAGGTATGGCTCTACGAACAGGTCAACATGCGGATAGAGGGCTGCATCATTGGATTCGATGAGTACATGAACTTGGTTTTGGATGATGCAGAGGAGGTTCACATGAAGACCAAGAACAGGAAGCCCCTGGGTAAGTGTGAACTTTGCTATGGTGGACGGGTTATGTTGAAAGGAGACAACATCACATTGCTGCAGAGTGTGTCCACTTGATCGTCTGATAGGAGTTCATCTGAATATACTTGTTTGCTGTTAGATTGTTGGTTTTACTTTTTTTTTTCATTTGTCAATATTTGGATTGATTCATTCTTATAATTGTGGAAACCTTTTTTTTTTTATTTCTGATTTTCCAAA

Function

symbol description
snrpe Predicted to enable RNA binding activity. Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytosol and nucleus. Predicted to be part of several cellular components, including U2-type spliceosomal complex; methylosome; and spliceosomal snRNP complex. Human ortholog(s) of this gene implicated in hepatocellular carcinoma; hypotrichosis 1; hypotrichosis 11; and lupus nephritis. Orthologous to human SNRPE (small nuclear ribonucleoprotein polypeptide E).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_09891658_09893015.mRNA False 399 mRNA 0.40 4 9891658 9893156

Neighbor

gene id symbol gene type direction distance location
CI01000306_09866302_09875270 KIF17 coding upstream 15941 9866302 ~ 9875717 (+)
CI01000306_09860935_09865155 SH2D5 coding upstream 26404 9860480 ~ 9865724 (+)
CI01000306_09851578_09857742 HP1BP3 coding upstream 33106 9851227 ~ 9858552 (+)
CI01000306_09674684_09680504 CRELD1 coding upstream 210985 9672775 ~ 9680673 (+)
CI01000306_09656951_09671072 NA coding upstream 219892 9655395 ~ 9671766 (+)
CI01000306_09922070_09935786 SOX13 coding downstream 28914 9922070 ~ 9936407 (+)
CI01000306_09971328_09977478 NA coding downstream 78172 9971328 ~ 9977752 (+)
CI01000306_10078014_10104625 NA coding downstream 184400 10077556 ~ 10105147 (+)
CI01000306_10109047_10115899 NA coding downstream 214479 10107635 ~ 10116072 (+)
CI01000306_10190981_10191175 NA coding downstream 297825 10190981 ~ 10191195 (+)
G435639 NA non-coding upstream 6739 9878664 ~ 9884919 (+)
G435637 NA non-coding upstream 13777 9877640 ~ 9877881 (+)
G435609 NA non-coding upstream 142829 9745834 ~ 9748829 (+)
G435590 NA non-coding upstream 174044 9704707 ~ 9737144 (+)
G435660 NA non-coding downstream 3838 9896994 ~ 9897394 (+)
G435661 NA non-coding downstream 4704 9897860 ~ 9898223 (+)
G435663 NA non-coding downstream 10793 9903949 ~ 9904587 (+)
G435664 NA non-coding downstream 11702 9904858 ~ 9905113 (+)
G435678 NA non-coding downstream 120379 10013535 ~ 10013776 (+)
CI01000306_09263755_09288503 NA other upstream 606329 9263589 ~ 9289035 (+)
CI01000306_09225597_09230504 NA other upstream 665152 9225512 ~ 9231333 (+)
G436932 NA other downstream 1189832 11082988 ~ 11098376 (+)
G437030 NA other downstream 1376602 11269758 ~ 11271160 (+)

Expression


Co-expression Network