CI01000306_10194611_10226157 (CDK18)


Basic Information

Item Value
gene id CI01000306_10194611_10226157
gene name CDK18
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 10194238 ~ 10226166 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_10194611_10226157.mRNA
AGATAAATCCACCTCTAAACGGCATGTAAAAACAAAACAAACTGTGTCTCTTCCTGTCTAAGCTAGCGCTTCTTGGTTAGAACAGGCTGCACGGTGAATCAGACTTGTTGAAAGTCAAAAGTCTGGTTACAAAAGACTGAATAAACTAATACTCAGTGAAACTGGGTGATGAACCCTCAGCCCATGGCAGGACGGGGATTTGGATCTGGTTGCATGCCGGGAACAAAACATTTGTTTGGGGAGCAGTCAGGCTCCTCAGCTGTCTGTCTGAGGCAGCTGTTTCCACAACGCCCCATTTTTCCCCCAACACGGACCAGCTGCTCTGATTGGCTGAGGGTAAGGCACGCTGTTACTTCCTCCACCCCCGGGAGAAATGGCAGTGGCGGTGACAGCTGGAGATTGGAAGGAGAGAGCGGATCCGAGGACAGGCGGGGAGGAGACGCAAGAGCAGTTCTCTTCTATTTACCCCGTCCCCTTCCCTCCAGCTGCAAATGAACCTCCAAGCCAAGCGTGGCGGGAGAGACGTCTGCAGGTCGGGATGGAAAAAGGCGTCAGAAGCGCCCTGAGAAATAGAACGCTCCGTTCCAATTTACTCGCCTATATACCTAAGATTATTGGAACTCAATTACCGCAAGCCCGAGCGGAGAGGTACAGTGAGAGTGTGATGCTGGAGGTCAGTTTGTGTGTCAGCCCAGATCAGATGAGATGGGCTTTGATGTTCGGTGGGGGCCCCCGAGTCACTCAAGCGGCTCAGATCCAATTTCTGACCCTGTCCTCGGCACACGCACTGGGGTCAGAACTCAAATACCCCTCCGGCCTGTCAGGAGGGAGGGATTCTGATCCCTGCACAAACTCAGGACAACAGCAAATGCCAAGTGTGGTGCCCAATAGTCTGGGTCTACACAGCCTGCAACCCAGTCCAGTGGCTCCAGACAGTCAGGCTCAATCTCCCACCCATCTGCAGTACCGCAACAAAGTCCAGCACCGCCGATTCTCCATGGAGGATGTAACTAAGAGGATGTCTCTGCCCATGGATATTCGTCTCCCGCCAGAGTTTCTGAAGAAGTTACAGATGGAAAGCACTCCACCATGCAAACCTCTCAGCCGCATGTCCAGAAGAGCCTCACTGTCGGACATTGGCTTCGGGAAATTGGAGACCTATGTGAAGTTGGGCAAACTAGGAGAGGGCACATACGCAACGGTATTCAAGGGTCGCAGCAAACTCACAGAAAACCTGGTGGCTCTGAAAGAGATTCGGCTCGAGCACGAAGAGGGCGCCCCGTGCACGGCCATACGGGAAGTGTCACTGCTGAAGAACCTGAAACACGCCAACATCGTAACACTGCATGACATTATCCATACAGACCGGTGTCTCACCCTTGTCTTTGAGTATCTGGACAGTGACTTGAAGCAGTACCTCGACAACTGTGGAAACCTAATGAGCATGTACAATGTGAAGATATTTATGTTCCAGCTTCTTCGTGGTTTATCATATTGTCATAAGAGGAAGATTCTCCACCGGGACCTGAAGCCTCAGAATCTGCTCATTAATGACAAGGGAGAACTCAAACTGGCAGACTTTGGTTTGGCCAGAGCAAAATCAGTCCCAACAAAAACCTATTCGAATGAGGTTGTGACCTTGTGGTATCGACCCCCTGATGTTCTACTGGGTTCTACGGAGTATTCCACACCAATAGACATGTGGGGCGTGGGCTGTATCCTGTACGAAATGGCGACGGGGCGTCCCATGTTTCCCGGATCGACTGTCAAAGAAGAACTACACCTGATATTTCGGCTCATGGGCACCCCAACTGAGGAAACCTGGCCCGGAATCACAGCTAATGAGGAATTCAAATCCTACCTGTTTCCTCAGTACCGAGCACAAGCGCTCATTAATCATGTGCCCAGGCTTGACACAGAGGGGATAGACCTTCTTTCGGCTTTATTGCTGCACCCAACAACACCATTACAGCTACATGAATTTACGTCACTAATACACTTAACTTACGCCATCTCAATCGAGAAACACATTCCTGTAACATTTTAAGCCTGAACA

Function

symbol description
cdk18 Predicted to enable ATP binding activity and protein serine/threonine kinase activity. Predicted to act upstream of or within protein phosphorylation. Orthologous to human CDK18 (cyclin dependent kinase 18).

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K15596 CDK18, PCTK3; cyclin-dependent kinase 18

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_10194611_10226157.mRNA True 2056 mRNA 0.51 14 10194238 10226166

Neighbor

gene id symbol gene type direction distance location
CI01000306_10190981_10191175 NA coding upstream 3043 10190981 ~ 10191195 (+)
CI01000306_10109047_10115899 NA coding upstream 78166 10107635 ~ 10116072 (+)
CI01000306_10078014_10104625 NA coding upstream 89091 10077556 ~ 10105147 (+)
CI01000306_09971328_09977478 NA coding upstream 216486 9971328 ~ 9977752 (+)
CI01000306_09922070_09935786 SOX13 coding upstream 257831 9922070 ~ 9936407 (+)
CI01000306_10241081_10252745 MFSD4A coding downstream 14915 10241081 ~ 10252864 (+)
CI01000306_10304503_10316470 NA coding downstream 78079 10304245 ~ 10316678 (+)
CI01000306_10332743_10335743 NA coding downstream 106495 10332661 ~ 10335849 (+)
CI01000306_10347562_10355420 NA coding downstream 120185 10346351 ~ 10355457 (+)
CI01000306_10429251_10466444 EPHA8 coding downstream 203085 10429251 ~ 10466851 (+)
G435753 NA non-coding upstream 55060 10138919 ~ 10139178 (+)
G435750 NA non-coding upstream 58935 10134983 ~ 10135303 (+)
G435702 NA non-coding upstream 63358 10053714 ~ 10130880 (+)
G435746 NA non-coding upstream 68987 10122964 ~ 10125251 (+)
G435701 NA non-coding upstream 141034 10052877 ~ 10053204 (+)
G435764 NA non-coding downstream 30755 10256921 ~ 10261092 (+)
G435767 NA non-coding downstream 57472 10283638 ~ 10286492 (+)
G435878 NA non-coding downstream 286584 10512750 ~ 10527209 (+)
G435889 NA non-coding downstream 380698 10606864 ~ 10607159 (+)
G436913 NA non-coding downstream 451199 10677365 ~ 10677606 (+)
CI01000306_09891658_09893015 SNRPE other upstream 300999 9891532 ~ 9893239 (+)
G435639 NA other upstream 309319 9878664 ~ 9884919 (+)
CI01000306_09860935_09865155 SH2D5 other upstream 331049 9860480 ~ 9865724 (+)
G435590 NA other upstream 457094 9704707 ~ 9737144 (+)
CI01000306_09263755_09288503 NA other upstream 908909 9263589 ~ 9289035 (+)
G436932 NA other downstream 856822 11082988 ~ 11098376 (+)
G437030 NA other downstream 1043592 11269758 ~ 11271160 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_003638 CDK18 coding NC_007122.7 CM002895.2 38280454 ~ 38420819 (+)
bowfin (Amia calva) AMCG00013952 LOC108250382 coding CM030125.1 CM030125.1 48099676 ~ 48143917 (+)