CI01000306_10347562_10355420


Basic Information

Item Value
gene id CI01000306_10347562_10355420
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 10346351 ~ 10355457 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_10347562_10355420.mRNA
CTATAAAAAGAAACCGTCACTACTGTATTCAGGCTGGGCTCAAGAATAGCTAGCAAGCGCCATTGGTAAACAGCTTGTCGGTTAAGGTTCACATAACATGATTACGGAAGCGAAAATGACAAAAAACAAAATTTTGCTCAAATGGGGACACTTTCTCCTTCAAAACTAGGCATGAAGCTAATTAACTTTGCCGATAATACAGGGCTCCAGACCATAATTATTAGAGAAAGCTTTGTCTCCTTTAGGACCCCGAGTGATCCCATTGGTTCAACAGGCTTTTAATGGGTAGTATTTTTAACGCCTGGTTATAATTCCTGCAAAATCACGTTATGATTTAAAATGCATTATAATGACCATTAATGTCTTTTAAATCACATGGTTTATATACTAGTATATAACTGAAGCTACAGGTTGTGAAATGACAACCTGACAATTGTCATATTGGCTGCGTGAGCTTCTCCAGCTTTGTTGTTGTTGAGCAAAACTCCGCCATATTCTAGAACCGGGGTGGGGAGAAGCAGCTCATTTGCATTTAAAGGGACACCGACAAAAACGGCGTGTTTTTGCTCACACCAAAATAGGGGCAGATTTGACAAGCTATAATAAATGATCTTTGGGGTATTTTGAGCTGAAACTTCACAGACACATTCTGGGGACACCGGAGACTTATATTACATCTTGTGAAAGGGGCATTATAGGTCCCCATTAATGTATGATGTGTAATTATAAGTTGAATTGACTGAAATAGAAACCTTTTTAGGTAACATTTTGGATCCTTACCTACACTGATAATGATTTAACAATTTAAATACACATGGATCAGCAGTATAACATGGTCTTGCACTGAAATGCAATGTGCTAAATTGACACAAACTGTTTAGTCAATTCTGCTCTCTCCTGGCTTCACAGAGCTGTTTCATACGCAACAAAGTTAATAACACGACAAGAGTGCTCTCAGGTTTAATTAAGAGGGAGCTATCTCTGCCCACACATCTTTAAAAATAGATTTCACATCCACCGTAACCTCAAGGTTTCTCTGGTTAATATGCCAAAGCTTTATCAGATCAAAGAAAGAGAACTAGAAAGGCAAAAAAAACAGTTAGCTGACCTGGACGAGACAGTCATTAGAGGAGCTTGGTGAGTCCACACTTTCTGTTCATAGTCTTCACTGATGCTTAAAATTCCAGTGCAGGCCACATATACAGGAAAAAATGAATGAAACCGAATTTATCAACATCATTAATAACAGACTATCCTTGCGTTTGAGGCACACTTTTATTCCACCAGAGGATGTCTTTCCGGGCTGCAAGAAGTGTGGAAGGAAAGAAAGCGGGGAAAAAATAAAAAGGGCTTGCTGTCAATTATCTCCCCTCCACCAGGCTCCAGGAGAAAGAGAGCAGCAAGTTGTAAACAGTTCTGTGAAGCTGTCAAAACAAGTCACACCAGAAGAGAATACAGATGAGCTGGTGAGGTATGGAAGGAAACTTCTGCTTCTAAGCTTTTCCCGGCCAATTATTATTCTGAAACAAATCCAGCAGTCCGTCAGTGGAAAAAACATTGCCCCCAAGATAACAAAGGACATAGACCAAGGAACACTGTTTCCCTGCAAATTGAATGTCGTCTGCTTTAACACATCGCCTCCGTTGTCCTCTTCGACAAACTTTTGGCTTCTGGCTACGAAAAGACAATACAAACCAGATTACAAAAAGGAGCCAGCATTACAAAACCCCGCTTTGAATCCTCTGAGTTTGACACAGAACCTTTCCCAACTTCCCCCAAGGTTCAGACGACACATCGACAGTGAAACAGAGCTTAGACCTCCTGCGCTCATTTACTGCAATCCATCTCCAATCTCAACTCCACGGGAATCGTTAAACACGACTCCAAAGGATTCCACGCTGCGAATATCCCCTGTCATTTCATTGTACGTCCTGCAGCAGAACCGCATTTCCATCATTGCAAGCCTCTATCTGGGCACGTCAGAGTCCAGTCGATACAGGCGTAGAGAAAAGCAGTGGCCTGTAATTGTCGTGCTGTGCTTTTGACAGTCCTAAACACTCAAATGGACAACCCCCGTCTAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_10347562_10355420.mRNA True 2082 mRNA 0.41 6 10346351 10355457

Neighbor

gene id symbol gene type direction distance location
CI01000306_10332743_10335743 NA coding upstream 10502 10332661 ~ 10335849 (+)
CI01000306_10304503_10316470 NA coding upstream 29673 10304245 ~ 10316678 (+)
CI01000306_10241081_10252745 MFSD4A coding upstream 93487 10241081 ~ 10252864 (+)
CI01000306_10194611_10226157 CDK18 coding upstream 120185 10194238 ~ 10226166 (+)
CI01000306_10190981_10191175 NA coding upstream 155156 10190981 ~ 10191195 (+)
CI01000306_10429251_10466444 EPHA8 coding downstream 73794 10429251 ~ 10466851 (+)
CI01000306_10548464_10549530 C21H1ORF50, CLG25H1ORF50, CUNH1ORF50 coding downstream 193007 10548464 ~ 10549627 (+)
CI01000306_10564069_10568262 CDC42P6, CDC42.L, CDC42L, BRAFLDRAFT_122664, CDC42 coding downstream 207383 10562840 ~ 10568557 (+)
CI01000306_10738169_10739341 SVBP coding downstream 382712 10738169 ~ 10741047 (+)
CI01000306_10751001_10756733 NA coding downstream 395153 10750610 ~ 10756775 (+)
G435767 NA non-coding upstream 59859 10283638 ~ 10286492 (+)
G435764 NA non-coding upstream 85259 10256921 ~ 10261092 (+)
G435753 NA non-coding upstream 207173 10138919 ~ 10139178 (+)
G435750 NA non-coding upstream 211048 10134983 ~ 10135303 (+)
G435746 NA non-coding upstream 221100 10122964 ~ 10125251 (+)
G435878 NA non-coding downstream 157293 10512750 ~ 10527209 (+)
G435889 NA non-coding downstream 251407 10606864 ~ 10607159 (+)
G436913 NA non-coding downstream 321908 10677365 ~ 10677606 (+)
G436973 NA non-coding downstream 374671 10730128 ~ 10730492 (+)
CI01000306_09891658_09893015 SNRPE other upstream 453112 9891532 ~ 9893239 (+)
G435639 NA other upstream 461432 9878664 ~ 9884919 (+)
CI01000306_09860935_09865155 SH2D5 other upstream 483162 9860480 ~ 9865724 (+)
G435590 NA other upstream 609207 9704707 ~ 9737144 (+)
CI01000306_09263755_09288503 NA other upstream 1061022 9263589 ~ 9289035 (+)
G436932 NA other downstream 727531 11082988 ~ 11098376 (+)
G437030 NA other downstream 914301 11269758 ~ 11271160 (+)

Expression


Co-expression Network