XLOC_012785 (chka)


Basic Information

Item Value
gene id XLOC_012785
gene name chka
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 21122818 ~ 21145374 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025511
CTTGCGTACAGTCATATACAGTATTTCATAAAGTGTCCCCGTTAAATCTGCGTTTAGCATAACTGACAATTGCACAGAGAGTCTACGACGCAATTTATTgccatatttgaattatttacgTGATCAGTGACCAAGAGCAAACATGAAGACTAAATTCATCAATGGCGTGTCTTCTTCGCCTTCAATGTCTTTGGGTTTGCTGGTGAATGAAAGCGTCCTCGAAGTCCAGCCCGACAGTGTGAACGACTGCAAAGATATTATCCGACCGGATGAGCCAGACCAGCAGACGAAGCATAAGGCGTATCTGTGGTGTAGAGAATTCCTCCACGGAGCCTGGAAATCCATTGATGAAGAGGATTTTCAAATCTCAATCATCAGagGAGGCCTGAGCAACAAACTGTTCCTCTGCGCTTTGCCAGAGATGCAAGCAAGCCTTGGAGATGAACCACGAAATGTGCTCCTTCGCCTATATGGAGAAATTCTgcagGGAGCTGATGCCATGGTACTGGAGAGTGTGATGTTTGCTATCCTGGCCGAGAGGGAGCTTGGGCCCAAGCTCTATGGCATCTTTCCACAAGGCAGGCTGGAACAGTTTGTCCCAAGTCGAAAACTGACCACAGATGAGCTGAGCGTCCCTGGTATAAATGCTGAGATTGCTGAAAAGATCGCCAGATTTCACGGAATGAGAATGCCCTTCAACAAGGAGCCAAAGTGGCTTTTTGGCACCATGGAAAAGTACATGGATCAAGTGCTTCAGCTCACCTTCACCAGGGAACCTCATCTGCGAAACTTCTCTCGCATTTTGAGCTACAACTTGCCTCAAGAGATGGACAATCTCAaGTGCCTACTTGAATCTACCCCCTCTCCTGTTGTTTTCTGCCACAATGACCTGCAAGAAGGAAATATCTTACTTCTGAATGGCCGTgagaacacagacagacagaggctCATGCTGATTGACTTCGAGTACAGCAGCTACAACTACAGAGGATTTGACATTGGAAATTTCTTCTGTGAGTGGACCTACGACTACACCTATGACAAGTTCCCATTCTTCACAAACAACACCAAAAATTACCCCACCAAAGCACAGCAGatGCATATCTTTCACAGTTATCTGTTGGAATCCGATGCTGGATTTAAACACTTGAGTGAGGAGGACCAGATGAAGCTCAAAGAAGATATGCTAGTGGAGGTTAACAGGTTTGCTCTGGCCTCCCACTTCTTTTGGGGATTGTGGTCCATGATCCAGGCCAAAATATCTACAATTGAGTTCGGATACATGGAGTACGCCATGGCCAGGTTTGATGCCTACTTTGAGCTGAAGAGGAAGCTCGGGGTTTAAAGGAAACGTGCATTCAATTGACAGCGGAGAGAAGGAAGTGGGAACAGCCGCTCAAATGATGTCAGGAAAAGAGCAGAGCAGAGAAAGAGGACGCCCTGCATCTGTAGTGATTCAGCCACCCTGCATGGACCAAAAATCAATGCAACATACGTATTTAAAAAGGCCCTGCGCACTGAGCGCCCCCATATATGCTGCTTCTCAGTGTTTACAAGTTTAAGCCTCTCACATTTAACACACCAGCCTGAGCTTCAGGACAGTCGGAGAATACTAGAAGGCAAGGTTACTTGGAGAAAAAATTTATTGAGTGTAGGTCAGAGATTAGGCGGGAAATAAGTTTGTGCAGATGCAATTTTAATTCGTGATTCAAAGAGCGGTGTGGTGGAAAGTACTTCATACTAACTTCAACTTGTTTGTTATCACCCAGTCATCTGCTGTAGTGTTATCTGGTGATAGAAGATGCTCTGTGAAAGAGCAAGGTTCAAAAACTGGACCTGTTACTAGAAAAATGGTACAACAGACCAAACTATGTTGACACTGTGGTTCAGTATTGTGTTTCTCGAGTTTCCATTTTTTGGggtgtgaattttttttactgGATGATTTACCTCTTTTTCTACTCGAACTTCTAGTAGATCATGTCTTCATTTCTATTTCTAGAAGATCCGCATGATGTGAAGTGAAAACTGGGACCGGACCATCTTTCTTCTTTGGGAGAGAGATGGTATCAGATATCTTGTCTGTCTTAACAGTGGAAAATTGTATGGTCTTCTCGACCGTAGTGATCTCATTCACCTCTTATTAGAGGtgcttgtgttttttatataaaaactgatcAGAAAAAGTGTCCGTTATGAGATTACTCCCTCTTGTATCTGATTTAATATGAATCGATAAGCGTTAGATATTATTAAAACTTAATATCAGTCTATATTTGGTCCAATTATGTTTCGCGAAGTGAACGTTTATGAATGTTTATACTCCTTTTTTATGCTATGAAATTTGTACAACTGAACAAAATGTTCGTAATGCGTTTAGTTAACCttaaaagtattgtttattttattttgtatgtttgtagtATATGATATTATTAAGGCAGcctattttttcatttgtttgtttatgctaaGTATAATATTAAAGGCACTTTCTGAAGTAGTTCTGTGAAGAAGTTTTAGTATTTGCAAATGTAACTTTACTATTATTTTTCTGCAACGGAATATGTATTTTTCTTAATAAGAAAGTGTTTTCTGTCCTAATTGAAAAGATGTCAGTGGATCTTTTGACCATTTTTACTGTATTATCAATGCGAtttcacgacaattcgtaactttttgatttagtggctaattcgtatgaatttgtatgatctaatttgtacactttaatatgatttgctcatcactcagtgatggttgggtttaggggcggggttgggtgccacaccttctttttaaaatcttacattttcatatgactgaacttgtttgatttcataagaattagccactaaaccgacaaaacgtaaaatacttatgttttctcgtgagatcaggctggtattatACTTGATTTCTGATTTCAACACATATCTTGAaccatatatataataaaatgtaaatattcatttacatgtttctaaataaatgttatttttttgaaCATCAGTAAACAGAAAGGAAATAATGGAAGTatattgttaaatgttaaaaaatacagtttttttgaaATCCGATGTGCATCTAGGCCAGCTTTACTAACTTATCCATTTGTTAACATCACTGTCAAGCCTCTAAAACTTAATACAAGTGAGGAATATAAAAGGTTATTTGCACGTCTGCTTACAAATGaggtaaaatgtaaaaacaatcgTTTTGTAATGTGCAAATTCATGCTGCTTTGCATATGATTGTGAATAAAGAGTTGCAAAATTA
>TCONS_00025512
ATGAAGACTAAATTCATCAATGGCGTGTCTTCTTCGCCTTCAATGTCTTTGGGTTTGCTGGTGAATGAAAGCGTCCTCGAAGTCCAGCCCGACAGTGTGAACGACTGCAAAGATATTATCCGACCGGATGAGCCAGACCAGCAGACGAAGCATAAGGCGTATCTGTGGTGTAGAGAATTCCTCCACGGAGCCTGGAAATCCATTGATGAAGAGGATTTTCAAATCTCAATCATCAGagGAGGCCTGAGCAACAAACTGTTCCTCTGCGCTTTGCCAGAGATGCAAGCAAGCCTTGGAGATGAACCACGAAATGTGCTCCTTCGCCTATATGGAGAAATTCTgcagATGTCCTGTAATAAAGGGGATTCCAGGCAATCAAACACAGAAAATCACTTTCAAGGAGCTGATGCCATGGTACTGGAGAGTGTGATGTTTGCTATCCTGGCCGAGAGGGAGCTTGGGCCCAAGCTCTATGGCATCTTTCCACAAGGCAGGCTGGAACAGTTTGTCCCAAGTCGAAAACTGACCACAGATGAGCTGAGCGTCCCTGGTATAAATGCTGAGATTGCTGAAAAGATCGCCAGATTTCACGGAATGAGAATGCCCTTCAACAAGGAGCCAAAGTGGCTTTTTGGCACCATGGAAAAGTACATGGATCAAGTGCTTCAGCTCACCTTCACCAGGGAACCTCATCTGCGAAACTTCTCTCGCATTTTGAGCTACAACTTGCCTCAAGAGATGGACAATCTCAaGTGCCTACTTGAATCTACCCCCTCTCCTGTTGTTTTCTGCCACAATGACCTGCAAGAAGGAAATATCTTACTTCTGAATGGCCGTgagaacacagacagacagaggctCATGCTGATTGACTTCGAGTACAGCAGCTACAACTACAGAGGATTTGACATTGGAAATTTCTTCTGTGAGTGGACCTACGACTACACCTATGACAAGTTCCCATTCTTCACAAACAACACCAAAAATTACCCCACCAAAGCACAGCAGatGCATATCTTTCACAGTTATCTGTTGGAATCCGATGCTGGATTTAAACACTTGAGTGAGGAGGACCAGATGAAGCTCAAAGAAGATATGCTAGTGGAGGTTAACAGGTTTGCTCTGGCCTCCCACTTCTTTTGGGGATTGTGGTCCATGATCCAGGCCAAAATATCTACAATTGAGTTCGGATACATGGAGTACGCCATGGCCAGGTTTGATGCCTACTTTGAGCTGAAGAGGAAGCTCGGGGTTTAA

Function

symbol description
chka Is expressed in swim bladder. Orthologous to human CHKA (choline kinase alpha).

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-149 Is expressed in swim bladder. Orthologous to human CHKA (choline kinase alpha).

Ensembl:

ensembl_id ENSDARG00000041078

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025511 False 3279 mRNA 0.39 11 21122818 21145374
TCONS_00025512 True 1257 mRNA 0.47 12 21122960 21143440

Neighbor

gene id symbol gene type direction distance location
XLOC_012784 kmt5b coding upstream 2600 21113216 ~ 21120218 (+)
XLOC_012783 arpin coding upstream 46812 21071023 ~ 21076006 (+)
XLOC_012782 fam169b coding upstream 59439 21061216 ~ 21063379 (+)
XLOC_012781 BX548061.1 coding upstream 99217 21021699 ~ 21023601 (+)
XLOC_012780 pgpep1l coding upstream 246821 20869923 ~ 20875997 (+)
XLOC_012786 NA coding downstream 18050 21163424 ~ 21169748 (+)
XLOC_012787 BX571884.1 coding downstream 46291 21191665 ~ 21191784 (+)
XLOC_012788 hydin coding downstream 128375 21273749 ~ 21401401 (+)
XLOC_012789 necab2 coding downstream 263420 21408794 ~ 21620816 (+)
XLOC_012790 NA coding downstream 324262 21469636 ~ 21473364 (+)
XLOC_012772 NA non-coding upstream 745883 20328119 ~ 20376935 (+)
XLOC_012771 NA non-coding upstream 797597 20316443 ~ 20325221 (+)
XLOC_012769 BX890624.2 non-coding upstream 914689 20089381 ~ 20208129 (+)
XLOC_012759 NA non-coding upstream 1501865 19524841 ~ 19620953 (+)
XLOC_012792 CT573204.1 non-coding downstream 932770 22078144 ~ 22081753 (+)
XLOC_012793 NA non-coding downstream 954245 22099619 ~ 22100228 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_03538324_03552770 CHKA coding CI01000013 null 3538324 ~ 3552770 (-)
bowfin (Amia calva) AMCG00007393 NA coding CM030123.1 CM030123.1 17327340 ~ 17348888 (-)