G431505


Basic Information

Item Value
gene id G431505
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 184011 ~ 185570 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU495411
AGATGGAAAACCTCAACAGAACAGAAGACAGGTGGAAGATGGACATGTGAGGAGATGGTCGTTTAACAGTTCAGTGAATCACGGCACACAAACCAATCCTTCATCAGTCAGAGGGAACGTGTTCAGGATCTGCAGCGTTCGGCTCTCATGTGGATCTCTGAGATCTGTAACAGTCGAGCCTCTTCCTTCGCGGGATATTGATGTGGATTCAGTCCTGCGGGACGCGTGATCCTCCATCGGATGTGAGCTGAGAAACACGCCACATACAGAGAGAGAGAAAACCAGAGAGAATCAGTCACAGCGAGACGAAAGTGAGTGTGAGATTCTCTGACAGCAGCAGGACGCGTGTAAATGAGCGTTTGAAGGGTCGAGCCACAGCGAGCCGCTGTATGAGCATCACAGATGGAGAAACACACACACACACACACACACAGCAGATGAGGATCCATCTGCATCTGAGACTCTCAAAGCTTCTGTGGTTCCTCCATGTTCTCCTCCTCTTCATTTCTCGGTCCTCTTCCTCACATGTACAGAAATCAACCTTCATAAATCACATTAATCATCTGCCATAATGTTCATCAGAAACTCCTTCCTCAAAACAGACAAACATCATGTTGAAAGGAGTTACTTTTAGTTCATATATACTGTAATTCTGTAATTCTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTGCAATTCTGAATATACTGCAGAATTGCATGAGAAAAGTTTGTATTGTCAGGATAATAAAACAGAAT
>TU495412
AGATGGAAAACCTCAACAGAACAGAAGACAGGTGGAAGATGGACATGTGAGGAGATGGTCGTTTAACAGTTCAGTGAATCACGGCACACAAACCAATCCTTCATCAGTCAGAGGGAACGTGTTCAGACACTGCAGGTGCCACAGGGAATCTTACAGAAAGAGTGTGAAGATAAAGCCACGCTGAGAGGAACAAGACACTGGAGACCAGAAACACACACACACACACACACACACACGTGTAATTTCTTTCTCTGATTTATTTACTCTCATGTCATGAAAGGATCTGCAGCGTTCGGCTCTCATGTGGATCTCTGAGATCTGTAACAGTCGAGCCTCTTCCTTCGCGGGATATTGATGTGGATTCAGTCCTGCGGGACGCGTGATCCTCCATCGGATGTGAGCTGAGAAACACGCCACATACAGAGAGAGAGAAAACCAGAGAGAATCAGTCACAGCGAGACGAAAGTGAGTGTGAGATTCTCTGACAGCAGCAGGACGCGTGTAAATGAGCGTTTGAAGGGTCGAGCCACAGCGAGCCGCTGTATGAGCATCACAGATGGAGAAACACACACACACACACACACACAGCAGATGAGGATCCATCTGCATCTGAGACTCTCAAAGCTTCTGTGGTTCCTCCATGTTCTCCTCCTCTTCATTTCTCGGTCCTCTTCCTCACATGTACAGAAATCAACCTTCATAAATCACATTAATCATCTGCCATAATGTTCATCAGAAACTCCTTCCTCAAAACAGACAAACATCATGTTGAAAGGAGTTACTTTTAGTTCATATATACTGTAATTCTGTAATTCTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTGCAATTCTGAATATACTGCAGAATTGCATGAGAAAAGTTTGTATTGTCAGGATAATAAAACAGAAT
>TU495413
AGATGGAAAACCTCAACAGAACAGAAGACAGGTGGAAGATGGACATGTGAGGAGATGGTCGTTTAACAGTTCAGTGAATCACGGCACACAAACCAATCCTTCATCAGTCAGAGGGAACGTGTTCAGGTAAGATTTCACCAGATCACACTGTATTATTAACCTCATCATGCACTCCATATCATTTTTGGTCTGTTGTGAGGGGGCAGCGTATGCAAATCACTTCAAATCAATTATGCATTGATCTTTTGCATTTCATGAAGTGCTTCAGTCTCTTTGGAGAGACATGCAGTGATAGAAAGATGGAAATGATGCTGGTGTCTGAACTGAGCTCTGAATCGACAAAGCCTGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCATCTTTGATAAGATGAGATTTGTTTTGTCAAGACACTGCAGGTGCCACAGGGAATCTTACAGAAAGAGTGTGAAGATAAAGCCACGCTGAGAGGAACAAGACACTGGAGACCAGAAACACACACACACACACACACACACACGTGTAATTTCTTTCTCTGATTTATTTACTCTCATGTCATGAAAGGATCTGCAGCGTTCGGCTCTCATGTGGATCTCTGAGATCTGTAACAGTCGAGCCTCTTCCTTCGCGGGATATTGATGTGGATTCAGTCCTGCGGGACGCGTGATCCTCCATCGGATGTGAGCTGAGAAACACGCCACATACAGAGAGAGAGAAAACCAGAGAGAATCAGTCACAGCGAGACGAAAGTGAGTGTGAGATTCTCTGACAGCAGCAGGACGCGTGTAAATGAGCGTTTGAAGGGTCGAGCCACAGCGAGCCGCTGTATGAGCATCACAGATGGAGAAACACACACACACACACACACACACACACACACACACACACACACACACACAGCAGATGAGGATCCATCTGCATCTGAGACTCTCAAAGCTTCTGTGGTTCCTCCATGTTCTCCTCCTCTTCATTTCTCGGTCCTCTTCCTCACATGTACAGAAATCAACCTTCATAAATCACATTAATCATCTGCCATAATGTTCATCAGAAACTCCTTCCTCAAAACAGACAAACATCATGTTGAAAGGAGTTACTTTTAGTTCATATATACTGTAATTCTGTAATTCTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTGCAATTCTGAATATACTGCAGAATTGCATGAGAAAAGTTTGTATTGTCAGGATAATAAAACAGAAT
>TU495414
AGATGGAAAACCTCAACAGAACAGAAGACAGGTGGAAGATGGACATGTGAGGAGATGGTCGTTTAACAGTTCAGTGAATCACGGCACACAAACCAATCCTTCATCAGTCAGAGGGAACGTGTTCAGACACTGCAGGTGCCACAGGGAATCTTACAGAAAGAGTGTGAAGATAAAGCCACGCTGAGAGGAACAAGACACTGGAGACCAGAAACACACACACACACACACACACACACGTGTAATTTCTTTCTCTGATTTATTTACTCTCATGTCATGAAAGGATCTGCAGCGTTCGGCTCTCATGTGGATCTCTGAGATCTGTAACAGTCGAGCCTCTTCCTTCGCGGGATATTGATGTGGATTCAGTCCTGCGGGACGCGTGATCCTCCATCGGATGTGAGCTGAGAAACACGCCACATACAGAGAGAGAGAAAACCAGAGAGAATCAGTCACAGCGAGACGAAAGTGAGTGTGAGATTCTCTGACAGCAGCAGGACGCGTGTAAATGAGCGTTTGAAGGGTCGAGCCACAGCGAGCCGCTGTATGAGCATCACAGATGGAGAAACACACACACACACACACACACACACACACACACACACACACACACACACAGCAGATGAGGATCCATCTGCATCTGAGACTCTCAAAGCTTCTGTGGTTCCTCCATGTTCTCCTCCTCTTCATTTCTCGGTCCTCTTCCTCACATGTACAGAAATCAACCTTCATAAATCACATTAATCATCTGCCATAATGTTCATCAGAAACTCCTTCCTCAAAACAGACAAACATCATGTTGAAAGGAGTTACTTTTAGTTCATATATACTGTAATTCTGTAATTCTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTGCAATTCTGAATATACTGCAGAATTGCATGAGAAAAGTTTGTATTGTCAGGATAATAAAACAGAAT
>TU495415
AGATGGAAAACCTCAACAGAACAGAAGACAGGTGGAAGATGGACATGTGAGGAGATGGTCGTTTAACAGTTCAGTGAATCACGGCACACAAACCAATCCTTCATCAGTCAGAGGGAACGTGTTCAGATGAGATTTGTTTTGTCAAGACACTGCAGGTGCCACAGGGAATCTTACAGAAAGAGTGTGAAGATAAAGCCACGCTGAGAGGAACAAGACACTGGAGACCAGAAACACACACACACACACACACACACACGTGTAATTTCTTTCTCTGATTTATTTACTCTCATGTCATGAAAGGATCTGCAGCGTTCGGCTCTCATGTGGATCTCTGAGATCTGTAACAGTCGAGCCTCTTCCTTCGCGGGATATTGATGTGGATTCAGTCCTGCGGGACGCGTGATCCTCCATCGGATGTGAGCTGAGAAACACGCCACATACAGAGAGAGAGAAAACCAGAGAGAATCAGTCACAGCGAGACGAAAGTGAGTGTGAGATTCTCTGACAGCAGCAGGACGCGTGTAAATGAGCGTTTGAAGGGTCGAGCCACAGCGAGCCGCTGTATGAGCATCACAGATGGAGAAACACACACACACACACACACACAGCAGATGAGGATCCATCTGCATCTGAGACTCTCAAAGCTTCTGTGGTTCCTCCATGTTCTCCTCCTCTTCATTTCTCGGTCCTCTTCCTCACATGTACAGAAATCAACCTTCATAAATCACATTAATCATCTGCCATAATGTTCATCAGAAACTCCTTCCTCAAAACAGACAAACATCATGTTGAAAGGAGTTACTTTTAGTTCATATATACTGTAATTCTGTAATTCTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTGCAATTCTGAATATACTGCAGAATTGCATGAGAAAAGTTTGTATTGTCAGGATAATAAAACAGAAT
>TU495417
AGATGGAAAACCTCAACAGAACAGAAGACAGGTGGAAGATGGACATGTGAGGAGATGGTCGTTTAACAGTTCAGTGAATCACGGCACACAAACCAATCCTTCATCAGTCAGAGGGAACGTGTTCAGGATCTGCAGCGTTCGGCTCTCATGTGGATCTCTGAGATCTGTAACAGTCGAGCCTCTTCCTTCGCGGGATATTGATGTGGATTCAGTCCTGCGGGACGCGTGATCCTCCATCGGATGTGAGCTGAGAAACACGCCACATACAGAGAGAGAGAAAACCAGAGAGAATCAGTCACAGCGAGACGAAAGTGAGTGTGAGATTCTCTGACAGCAGCAGGACGCGTGTAAATGAGCGTTTGAAGGGTCGAGCCACAGCGAGCCGCTGTATGAGCATCACAGATGGAGAAACACACACACACACACACACACACACACACACACACACACACACACACACAGCAGATGAGGATCCATCTGCATCTGAGACTCTCAAAGCTTCTGTGGTTCCTCCATGTTCTCCTCCTCTTCATTTCTCGGTCCTCTTCCTCACATGTACAGAAATCAACCTTCATAAATCACATTAATCATCTGCCATAATGTTCATCAGAAACTCCTTCCTCAAAACAGACAAACATCATGTTGAAAGGAGTTACTTTTAGTTCATATATACTGTAATTCTGTAATTCTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTGCAATTCTGAATATACTGCAGAATTGCATGAGAAAAGTTTGTATTGTCAGGATAATAAAACAGAAT
>TU495418
AGATGGAAAACCTCAACAGAACAGAAGACAGGTGGAAGATGGACATGTGAGGAGATGGTCGTTTAACAGTTCAGTGAATCACGGCACACAAACCAATCCTTCATCAGTCAGAGGGAACGTGTTCAGGATCTGCAGCGTTCGGCTCTCATGTGGATCTCTGAGATCTGTAACAGTCGAGCCTCTTCCTTCGCGGGATATTGATGTGGATTCAGTCCTGCGGGACGCGTGATCCTCCATCGGATGTGAGCTGAGAAACACGCCACATACAGAGAGAGAGAAAACCAGAGAGAATCAGTCACAGCGAGACGAAAGTGAGTGTGAGATTCTCTGACAGCAGCAGGACGCGTGTAAATGAGCGTTTGAAGGGTCGAGCCACAGCGAGCCGCTGTATGAGCATCACAGATGGAGAAACACACACACACACACACACAGCAGATGAGGATCCATCTGCATCTGAGACTCTCAAAGCTTCTGTGGTTCCTCCATGTTCTCCTCCTCTTCATTTCTCGGTCCTCTTCCTCACATGTACAGAAATCAACCTTCATAAATCACATTAATCATCTGCCATAATGTTCATCAGAAACTCCTTCCTCAAAACAGACAAACATCATGTTGAAAGGAGTTACTTTTAGTTCATATATACTGTAATTCTGTAATTCTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTGCAATTCTGAATATACTGCAGAATTGCATGAGAAAAGTTTGTATTGTCAGGATAATAAAACAGAAT
>TU495422
AGATGGAAAACCTCAACAGAACAGAAGACAGGTGGAAGATGGACATGTGAGGAGATGGTCGTTTAACAGTTCAGTGAATCACGGCACACAAACCAATCCTTCATCAGTCAGAGGGAACGTGTTCAGGTAAGATTTCACCAGATCACACTGTATTATTAACCTCATCATGCACTCCATATCATTTTTGGTCTGTTGTGAGGGGGCAGCGTATGCAAATCACTTCAAATCAATTATGCATTGATCTTTTGCATTTCATGAAGTGCTTCAGTCTCTTTGGAGAGACATGCAGTGATAGAAAGATGGAAATGATGCTGGTGTCTGAACTGAGCTCTGAATCGACAAAGCCTGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCATCTTTGATAAGATGAGATTTGTTTTGTCAAGACACTGCAGGTGCCACAGGGAATCTTACAGAAAGAGTGTGAAGATAAAGCCACGCTGAGAGGAACAAGACACTGGAGACCAGAAACACACACACACACACACACACACACGTGTAATTTCTTTCTCTGATTTATTTACTCTCATGTCATGAAAGGATCTGCAGCGTTCGGCTCTCATGTGGATCTCTGAGATCTGTAACAGTCGAGCCTCTTCCTTCGCGGGATATTGATGTGGATTCAGTCCTGCGGGACGCGTGATCCTCCATCGGATGTGAGCTGAGAAACACGCCACATACAGAGAGAGAGAAAACCAGAGAGAATCAGTCACAGCGAGACGAAAGTGAGTGTGAGATTCTCTGACAGCAGCAGGACGCGTGTAAATGAGCGTTTGAAGGGTCGAGCCACAGCGAGCCGCTGTATGAGCATCACAGATGGAGAAACACACACACACACACACACACAGCAGATGAGGATCCATCTGCATCTGAGACTCTCAAAGCTTCTGTGGTTCCTCCATGTTCTCCTCCTCTTCATTTCTCGGTCCTCTTCCTCACATGTACAGAAATCAACCTTCATAAATCACATTAATCATCTGCCATAATGTTCATCAGAAACTCCTTCCTCAAAACAGACAAACATCATGTTGAAAGGAGTTACTTTTAGTTCATATATACTGTAATTCTGTAATTCTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTGCAATTCTGAATATACTGCAGAATTGCATGAGAAAAGTTTGTATTGTCAGGATAATAAAACAGAAT
>TU495424
AGATGGAAAACCTCAACAGAACAGAAGACAGGTGGAAGATGGACATGTGAGGAGATGGTCGTTTAACAGTTCAGTGAATCACGGCACACAAACCAATCCTTCATCAGTCAGAGGGAACGTGTTCAGATGAGATTTGTTTTGTCAAGACACTGCAGGTGCCACAGGGAATCTTACAGAAAGAGTGTGAAGATAAAGCCACGCTGAGAGGAACAAGACACTGGAGACCAGAAACACACACACACACACACACACACACGTGTAATTTCTTTCTCTGATTTATTTACTCTCATGTCATGAAAGGATCTGCAGCGTTCGGCTCTCATGTGGATCTCTGAGATCTGTAACAGTCGAGCCTCTTCCTTCGCGGGATATTGATGTGGATTCAGTCCTGCGGGACGCGTGATCCTCCATCGGATGTGAGCTGAGAAACACGCCACATACAGAGAGAGAGAAAACCAGAGAGAATCAGTCACAGCGAGACGAAAGTGAGTGTGAGATTCTCTGACAGCAGCAGGACGCGTGTAAATGAGCGTTTGAAGGGTCGAGCCACAGCGAGCCGCTGTATGAGCATCACAGATGGAGAAACACACACACACACACACACAGCAGATGAGGATCCATCTGCATCTGAGACTCTCAAAGCTTCTGTGGTTCCTCCATGTTCTCCTCCTCTTCATTTCTCGGTCCTCTTCCTCACATGTACAGAAATCAACCTTCATAAATCACATTAATCATCTGCCATAATGTTCATCAGAAACTCCTTCCTCAAAACAGACAAACATCATGTTGAAAGGAGTTACTTTTAGTTCATATATACTGTAATTCTGTAATTCTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTGCAATTCTGAATATACTGCAGAATTGCATGAGAAAAGTTTGTATTGTCAGGATAATAAAACAGAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU495411 False 757 lncRNA 0.43 4 184011 185570
TU495412 False 911 lncRNA 0.43 4 184011 185570
TU495413 False 1246 lncRNA 0.43 2 184011 185570
TU495414 False 939 lncRNA 0.43 3 184011 185570
TU495415 False 931 lncRNA 0.43 4 184011 185570
TU495417 False 785 lncRNA 0.43 3 184011 185570
TU495418 False 755 lncRNA 0.43 4 184011 185570
TU495422 False 1198 lncRNA 0.43 4 184011 185570
TU495424 True 929 lncRNA 0.43 4 184011 185570

Neighbor

gene id symbol gene type direction distance location
CI01000306_00152291_00171300 NA coding downstream 11336 152051 ~ 172675 (-)
CI01000306_00120309_00130096 NA coding downstream 53740 119066 ~ 130271 (-)
CI01000306_00065259_00085553 NA coding downstream 98458 64341 ~ 85553 (-)
CI01000306_00034884_00043015 NA coding downstream 140399 34812 ~ 43612 (-)
CI01000306_00006427_00026938 NA coding downstream 156559 5306 ~ 27452 (-)
CI01000306_00199114_00202127 FILIP1L coding upstream 13390 198960 ~ 202127 (-)
CI01000306_00214122_00218144 NA coding upstream 28252 213822 ~ 218144 (-)
CI01000306_00264107_00273791 NA coding upstream 78307 263877 ~ 273791 (-)
CI01000306_00291753_00295570 GPR137B coding upstream 105774 291344 ~ 295570 (-)
CI01000306_00321852_00325373 NA coding upstream 135969 321539 ~ 325373 (-)
G431546 NA non-coding upstream 217647 403217 ~ 403559 (-)
G431550 NA non-coding upstream 223887 409457 ~ 409722 (-)
G431551 NA non-coding upstream 224858 410428 ~ 410715 (-)
G431556 NA non-coding upstream 232227 417797 ~ 418042 (-)
G431568 NA non-coding upstream 335390 520960 ~ 521551 (-)
CI01000306_00482506_00494090 PFKLB, PFKL other upstream 263134 482482 ~ 494090 (-)
G431706 NA other upstream 977457 1163027 ~ 1163338 (-)
G431814 NA other upstream 1126132 1311702 ~ 1312434 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other upstream 1532363 1717933 ~ 1726043 (-)
G432022 NA other upstream 2814666 3000236 ~ 3003891 (-)

Expression


Co-expression Network