G430272


Basic Information

Item Value
gene id G430272
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 217887 ~ 229552 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU494047
AGTTCTCCCTCCAGCATGCTGAGCAGGAACAGCAGGTCGTCTCGCGAGAGGTCTCGGCTCTTCCCCGCGCCGCTGCGCTCTCTCTGCGCTCGCTGTCTGCCGCCCGTCTGCTTCCTCTGGACGGTGGGCGTGTCCTCATGAGCATGACACGCCTCCTCGCGCTCGGTCGCCTGCCGCCGCGCTCGTGCTCTGGGCGGAGAGAGCTCCGCCTTCTCCGCGTCCTCCAGACTGTTGCTACGGGAACGCATGATCGTGCACCTCAACACGTCTGGTCTCTCACTGCTTCTCTTCTCCTCCGGTGTGTTTGCTGCTGCGATTCAGTCACATTCAGACCGTGTGAATGACAGACGAGAGAGAGAGAGAGAGACGGTGGGGGGGCTGCAGTGGGAGGAGAGACAGCAGATATAAGAGCTACAGCTAAATATAACACACACACACACACACACACACAGAAGCGTCCCAGGATGCACCTCATGAATGTCCAGAGCTGCAGACAAATAAGAAGTTTTCATTGGTGTCACATGTGTTCATCATGATTCAGACTGACACTCTGTGATTTCAGTTTCATCACCTTCATCATTCTAACAGGTTCAGATACTTTATAATAAGATCTCAATAATTAACATTAATAATGCATTAACTAACTAACAATGAGAAACACATTTGTTACAGCATGAGCTAACATCTGCACAGTGAACCTCAGTGTGTGTGTGTGTGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU494047 True 719 lncRNA 0.52 2 217887 229552

Neighbor

gene id symbol gene type direction distance location
CI01000306_00135679_00139917 NA coding upstream 77433 135500 ~ 140454 (+)
CI01000306_00107710_00118177 NA coding upstream 98927 106737 ~ 118960 (+)
CI01000306_00044391_00064128 NA coding upstream 153735 43677 ~ 64152 (+)
CI01000306_00235686_00242814 NA coding downstream 5895 235447 ~ 242861 (+)
CI01000306_00245734_00262949 LOXL4 coding downstream 15589 245141 ~ 263251 (+)
CI01000306_00279658_00285330 ERO1B coding downstream 50106 279658 ~ 285494 (+)
CI01000306_00285981_00288513 NA coding downstream 56277 285829 ~ 288715 (+)
CI01000306_00297906_00319127 NA coding downstream 68354 297906 ~ 319419 (+)
G430271 NA non-coding upstream 45 217589 ~ 217842 (+)
G430270 NA non-coding upstream 3573 214061 ~ 214314 (+)
G430269 NA non-coding upstream 4242 213332 ~ 213645 (+)
G430268 NA non-coding upstream 5534 212122 ~ 212353 (+)
G430245 NA non-coding upstream 51512 155063 ~ 166375 (+)
G430283 NA non-coding downstream 1267 230819 ~ 231095 (+)
G430207 NA non-coding downstream 38223 267775 ~ 337110 (+)
G430297 NA non-coding downstream 38690 268242 ~ 268866 (+)
CI01000306_00344942_00353683 NA non-coding downstream 123924 344547 ~ 354116 (+)
G430303 NA non-coding downstream 188256 417808 ~ 418042 (+)
G430409 NA other downstream 695992 925544 ~ 999902 (+)
G430452 NA other downstream 921045 1150597 ~ 1150938 (+)
CI01000306_01209847_01210850 ACYP2 other downstream 980181 1209395 ~ 1211232 (+)
G430719 NA other downstream 1918830 2148382 ~ 2150954 (+)

Expression


Co-expression Network