G430207


Basic Information

Item Value
gene id G430207
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 267775 ~ 337110 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU493975
TATATATATATATATATATATATATATATATTATATATAGTAAATGTAGACTAAATTTTCTTTTACTTATTTCCCCCATCCTTTCAACACAAAATATTGTCCTGAATGAGCAGAAGCTCATCTAAACTCATCCTCAGTGAAGATGGAGCGTGTGGTTTCTACAGACGCTTCCCTTCAGACACAGAAAGCTTCATTATTTTTGCCCAGAGCTGCAGCTGTTTCTGAAGGTCTGGAGAACGGGAGTCTCTCTAGGAGACGCAACTGAAGAAATCCAGTGTTACGACTGGAATAAAACACAGCAGGAGTTGAGCTGCTGCCCAGGAACGTCCGGCCAAAAGCCTTTATGGCAGCAGAGGCTGGATTTTCCAGGAACCCGGAGCTGCCTGATGTCATCCGATGTGTTTTCAAGGAGGAACACGTAGTGGAAGCTGGAGTGTGGTGGAGGTCTTCATCATGACAGGGTTTGGAGTCAGAGCTCTTGTTTTGGCCTGAGGTCTTTATAAAGGCTCCCGGCCCTCGGTTCGGCTCCAGAGCGCTTCACGATCAGTAAACAACACTTCTCTCCCAGAAATCCTCTGGTCCAATCACAGCGTCCGGCACCTGGGTCATCGACACCTGCTCCCCGTTTCTGCTCGGATTCTCCAGTGCTGTCAGCTGTGAAACTGAGAAAGGATGAGAAGGTGTGAAAGAAATGAATGTTTGTGTGTGTGTGTGTGTTCAGTAGGGGTCGCTGCTGCATCAGACTCCAAACACACACTCACACCGAAGATCATAACATCATTTAATCAGATTTGTATTTGCTTGATTGTTTCATAAGCAGAAATGAACACTGACTCTATTTACTCATTATGAATGATTCATCAGAGCATTTTTACATCATGTTTGTGTTTTTGGCAGATGTTTTCATCCAAAGTGACTCCCACTGCAGTCCAGATTTGATCAGGGAATCGAACCCATGAACGACTGTTTGAGCTACAGGAATGAGCGGTGGTAACATTTTTTTGTTTTATTAGTATTAATATTACAGTATAATATTAAAGAAAAGATGTTTGTCTTGTGATCTATCATCATAATGTGTGACTTTTCCCATTTCAGCTGACGTCGTCAATCGCTCTTATTTATCAACTTACCATCCAATCAATCCATCATGAAGATTTTTTTGTTCATACTGAGCGAGCTCATCTTTAACACTAGTACAGTGGGTTAGTGCAGTCATGTGTGTACTGTACTGTACTGGAGCGTGACGTGTGTCTGAGGCGGCAGTGCAGCGGCTCCGAGGGGAACAAAAGCCTCCCAGTGTGGCGTTTGTGATCCGCACCTGCTCGCGGCTCTCCTCAGTTCCTGTGTGTTTCTGCCAGCCCGGCTCATCCACAGGAGACTCTTGGCTCGGCGCTCGGCTGCAGATGGCCTGGGATTGATGCTCCGCACTGGATCTGATTAAAGCCTTTGAGAAGAGACAGGCATTGATCATGTCGAGCTGCATCCGAGAATACCAATTACACCCTTTGAACTGCCTTTAAATTATATCAGCATCCAATAATTACGCATCCATGAATAGTCATCATCGGGAAACAACGTCCTTTTCTCTTGTCATGGGGCTTCGAAGCTGCATAATCAGTGTGTTCTGCTGGAGCTTTCCTGATGGGATGAGCCGAGACTGTGAAACGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU493975 True 1669 lncRNA 0.45 2 267775 337110

Neighbor

gene id symbol gene type direction distance location
CI01000306_00245734_00262949 LOXL4 coding upstream 4524 245141 ~ 263251 (+)
CI01000306_00235686_00242814 NA coding upstream 24914 235447 ~ 242861 (+)
CI01000306_00135679_00139917 NA coding upstream 127321 135500 ~ 140454 (+)
CI01000306_00107710_00118177 NA coding upstream 148815 106737 ~ 118960 (+)
CI01000306_00044391_00064128 NA coding upstream 203623 43677 ~ 64152 (+)
CI01000306_00344942_00353683 NA coding downstream 7437 344547 ~ 354116 (+)
CI01000306_00367856_00370281 IRF2BP2B, I2B2A coding downstream 29312 366422 ~ 371450 (+)
CI01000306_00384380_00391350 NA coding downstream 46920 384030 ~ 392256 (+)
CI01000306_00399584_00413590 NA coding downstream 62423 399533 ~ 414128 (+)
CI01000306_00424179_00424623 NA coding downstream 86666 423776 ~ 424798 (+)
G430283 NA non-coding upstream 36680 230819 ~ 231095 (+)
G430272 NA non-coding upstream 38223 217887 ~ 229552 (+)
G430271 NA non-coding upstream 49933 217589 ~ 217842 (+)
G430270 NA non-coding upstream 53461 214061 ~ 214314 (+)
G430269 NA non-coding upstream 54130 213332 ~ 213645 (+)
G430303 NA non-coding downstream 80698 417808 ~ 418042 (+)
G430067 NA non-coding downstream 111934 449044 ~ 483614 (+)
G430309 NA non-coding downstream 170322 507432 ~ 507773 (+)
G430310 NA non-coding downstream 186953 524063 ~ 524288 (+)
G430409 NA other downstream 588434 925544 ~ 999902 (+)
G430452 NA other downstream 813487 1150597 ~ 1150938 (+)
CI01000306_01209847_01210850 ACYP2 other downstream 872623 1209395 ~ 1211232 (+)
G430719 NA other downstream 1811272 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 2636046 2973156 ~ 2979157 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) G80865 NA non-coding NC_056709.1 CM032078.1 11690440 ~ 11694453 (+)