Gene
RNA
| Item | Value |
|---|---|
| gene id | G430067 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 449044 ~ 483614 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU493831 | False | 1081 | lncRNA | 0.41 | 5 | 449044 | 483614 |
| TU493830 | False | 1185 | lncRNA | 0.45 | 2 | 481814 | 483614 |
| TU493832 | True | 1281 | lncRNA | 0.42 | 2 | 481814 | 483614 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_00424179_00424623 | NA | coding | upstream | 24246 | 423776 ~ 424798 (+) |
| CI01000306_00399584_00413590 | NA | coding | upstream | 34916 | 399533 ~ 414128 (+) |
| CI01000306_00384380_00391350 | NA | coding | upstream | 56788 | 384030 ~ 392256 (+) |
| CI01000306_00367856_00370281 | IRF2BP2B, I2B2A | coding | upstream | 77594 | 366422 ~ 371450 (+) |
| CI01000306_00344942_00353683 | NA | coding | upstream | 94928 | 344547 ~ 354116 (+) |
| CI01000306_00496203_00497820 | CUNH21ORF2 | coding | downstream | 12589 | 496203 ~ 498460 (+) |
| CI01000306_00534481_00545134 | NA | coding | downstream | 50867 | 534481 ~ 545321 (+) |
| CI01000306_00546664_00553895 | MGEA5L | coding | downstream | 62051 | 545665 ~ 554101 (+) |
| CI01000306_00571360_00574170 | KITH, TK1 | coding | downstream | 87649 | 571263 ~ 574535 (+) |
| CI01000306_00630572_00641931 | TMC6 | coding | downstream | 146958 | 630572 ~ 642126 (+) |
| G430303 | NA | non-coding | upstream | 31002 | 417808 ~ 418042 (+) |
| G430207 | NA | non-coding | upstream | 111934 | 267775 ~ 337110 (+) |
| G430297 | NA | non-coding | upstream | 180178 | 268242 ~ 268866 (+) |
| G430283 | NA | non-coding | upstream | 217949 | 230819 ~ 231095 (+) |
| G430309 | NA | non-coding | downstream | 23818 | 507432 ~ 507773 (+) |
| G430310 | NA | non-coding | downstream | 40449 | 524063 ~ 524288 (+) |
| G430311 | NA | non-coding | downstream | 41513 | 525127 ~ 525334 (+) |
| G430313 | NA | non-coding | downstream | 43089 | 526703 ~ 526984 (+) |
| G430314 | NA | non-coding | downstream | 44136 | 527750 ~ 527982 (+) |
| CI01000306_00235686_00242814 | NA | other | upstream | 211675 | 235447 ~ 242861 (+) |
| G430409 | NA | other | downstream | 441930 | 925544 ~ 999902 (+) |
| G430452 | NA | other | downstream | 666983 | 1150597 ~ 1150938 (+) |
| CI01000306_01209847_01210850 | ACYP2 | other | downstream | 726119 | 1209395 ~ 1211232 (+) |
| G430719 | NA | other | downstream | 1664768 | 2148382 ~ 2150954 (+) |
| CI01000306_02974291_02976718 | TP53INP2 | other | downstream | 2489542 | 2973156 ~ 2979157 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| rainbow trout (Oncorhynchus mykiss) | G106143 | NA | non-coding | NC_048566.1 | CM023220.2 | 2756008 ~ 2756799 (+) |
| rainbow trout (Oncorhynchus mykiss) | G2138286 | NA | non-coding | NC_048592.1 | CM023246.2 | 42368244 ~ 42385423 (-) |
| bowfin (Amia calva) | G96131 | NA | non-coding | CM030132.1 | CM030132.1 | 4329096 ~ 4329398 (-) |
| tiger barb (Puntius tetrazona) | G81038 | NA | non-coding | NC_056709.1 | CM032078.1 | 11525058 ~ 11527052 (-) |
