G430075


Basic Information

Item Value
gene id G430075
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 564976 ~ 647044 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU493842
TATCAATGTTGGAAACAGTTGTGTTGATATTTTTTTGGAACCTGTGATACTTTTTTCAGGATTCATTGATGAATAAAAGGTTAAAAAGAACAGCATTTATTCAAAATATAAATCTTTTCTAACAATATAAATCACTTTTTATCAATTTAACACATCCGTGCTGAATAAAAGTATTAATTTCTTTCAAAAAAAAGAAAGAAAAAAAAAAAAAGTTCAGAGGTCATCTGCATGTGTTTAACGCATGAAAACCTCCATAAATTCACAAACTTTTGTAATACAGACTGCTGTTCGCAACTTTCCATCTAGTTTAGCGTTGTTTTCTATGTACACAAAACAGAAAATAAAATACAAAGAAAAAAAAGAAAAGGATTAATAAAAATGTCATGGGGCCAATGATCAACTAGAAAAATATATACATGAACACTATGTATGTATATACTATATGGTATATACATACACATAATGCTGTACATATATACCATATCTATATTCATATACATGTATATTTACATATTACACAATGACACTTTAATAATCTCTTATTATGATTCCTGCGGCCGGCGGTGACGATTGGCTTTTCCACGGGATTGAACTACATACTGAAAATCATGTGTAATAACTGGAATACAGAGTGGAAAGACGTAGAAATGGGACCAAAGGAAACTGGACCTGGAGGTTTTAATACTGCTCTCAGTTCCAGATCCGCAGAAAACTGTCCCATGATCCTGTGGCCACGGCCATTCCGTCATCGTTTACTCCTAAACAGCTCACCCTGTTGTCGTGACCGGCCAGGACACCTGACGGAGGGAGCGATGCAGATTATTATAATGTTATATATAGATAGATAGATATAATCCGTGAAGGGCGTTTGCTCTTACCTGCACGTTCCCCTTTTAAAGTGTCCCAGACGTTGCAGTTGAAGTCATCGTAACCGGCCAGCAGGAGGCGTCCACTCTTGGAGAAGGCCACAGAGGTGATACCGCAGATAATGTTGTCATGAGAATACATCATCAGCTCCTGATCCGCACGCAGGTCGAACAGCCTGCAGGTGGCGTCGTCCGAACCCGTTGTGAAGGCATTTCCGTTCGGAAAGAACTGCAGGAGTAAACAACACAACTCAATACAGCTACCCATGATGCATTGCTACACG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU493842 True 1150 lncRNA 0.38 2 564976 647044

Neighbor

gene id symbol gene type direction distance location
CI01000306_00546664_00553895 MGEA5L coding upstream 10875 545665 ~ 554101 (+)
CI01000306_00534481_00545134 NA coding upstream 19655 534481 ~ 545321 (+)
CI01000306_00496203_00497820 CUNH21ORF2 coding upstream 66516 496203 ~ 498460 (+)
CI01000306_00442430_00460709 NA coding upstream 103793 442430 ~ 461183 (+)
CI01000306_00424179_00424623 NA coding upstream 140178 423776 ~ 424798 (+)
CI01000306_00664788_00672147 NA coding downstream 17677 664721 ~ 673052 (+)
CI01000306_00681384_00689565 NA coding downstream 34340 681384 ~ 689812 (+)
CI01000306_00693218_00693943 NA coding downstream 46174 693218 ~ 694559 (+)
CI01000306_00705287_00711760 CLCN4 coding downstream 58243 705287 ~ 714524 (+)
CI01000306_00730637_00781399 CLASP1 coding downstream 83593 730637 ~ 781399 (+)
G430189 NA non-coding upstream 2464 558552 ~ 562512 (+)
G430192 NA non-coding upstream 31310 528636 ~ 533666 (+)
G430314 NA non-coding upstream 36994 527750 ~ 527982 (+)
G430313 NA non-coding upstream 37992 526703 ~ 526984 (+)
G430311 NA non-coding upstream 39642 525127 ~ 525334 (+)
G430331 NA non-coding downstream 54939 701983 ~ 702194 (+)
G430335 NA non-coding downstream 82859 729903 ~ 730241 (+)
G430344 NA non-coding downstream 159473 806517 ~ 806752 (+)
G430389 NA non-coding downstream 260279 907323 ~ 913761 (+)
CI01000306_00235686_00242814 NA other upstream 327607 235447 ~ 242861 (+)
G430409 NA other downstream 278500 925544 ~ 999902 (+)
G430452 NA other downstream 503553 1150597 ~ 1150938 (+)
CI01000306_01209847_01210850 ACYP2 other downstream 562689 1209395 ~ 1211232 (+)
G430719 NA other downstream 1501338 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 2326112 2973156 ~ 2979157 (+)

Expression


Co-expression Network