G430095


Basic Information

Item Value
gene id G430095
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 580251 ~ 584121 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU493863
GGCCATTTTGTTCTCATGAACACATGGGAAGGAAACGCTGCTTTATTCACGAATGTTTTATGCCATATTCCAATTTTACACACAAGTTAATTTCTCAACTTTGGATTGAAACAGCTACTGAGACATGAAGAATATAGTAGAACTGAAACTCAAATACAGAAGATGTTCTCACCTGAGAAGCCCAGATCAGCCATCACGACGTACTTCCGCTCCTGAGCATTGCTCATCAAAGGCAGGTAAGCATCAGCCAATAGGAAGGCTACGCAAGCCAGGAAGGCGATGATGCCGATTCCCACCGCGTAATGACAGGCCCCGTCGTTCCCGTTGAAGACACACTTCGTCTGGGCATCATTTGCCCCGTTCACGTAACCTTCAGCGGTTATGGAGGCGAACACCACAATGGCAAAAACGAATGACTCAATGATTTACGCCCATATTTCCCGCCGTCGATTATTGATCACAATGAGTTGAATGTGACACATGTCACTCACCCAGCTGAGGAGTCGTATGATAGTTTGAGGCTGTTTGATGAATTTGATGAGATCGAATCCCGCTCCGGCGAGAGAGGCTCCGTACGCCACACTGCTCGACTCCATCGGTAAAAAACAAACACACACTCACTCACACAAACACACACACACGCGCGAGCGACAGCTGAATACACAACACGGACACACACCACCACCACCGGTGCAGCTGCTTCCTCAGATACTGGTGTCAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU493863 True 721 lncRNA 0.48 2 580251 584121

Neighbor

gene id symbol gene type direction distance location
CI01000306_00571360_00574170 KITH, TK1 coding upstream 5716 571263 ~ 574535 (+)
CI01000306_00546664_00553895 MGEA5L coding upstream 26150 545665 ~ 554101 (+)
CI01000306_00534481_00545134 NA coding upstream 34930 534481 ~ 545321 (+)
CI01000306_00496203_00497820 CUNH21ORF2 coding upstream 81791 496203 ~ 498460 (+)
CI01000306_00442430_00460709 NA coding upstream 119068 442430 ~ 461183 (+)
CI01000306_00630572_00641931 TMC6 coding downstream 46451 630572 ~ 642126 (+)
CI01000306_00664788_00672147 NA coding downstream 80600 664721 ~ 673052 (+)
CI01000306_00681384_00689565 NA coding downstream 97263 681384 ~ 689812 (+)
CI01000306_00693218_00693943 NA coding downstream 109097 693218 ~ 694559 (+)
CI01000306_00705287_00711760 CLCN4 coding downstream 121166 705287 ~ 714524 (+)
G430189 NA non-coding upstream 17739 558552 ~ 562512 (+)
G430192 NA non-coding upstream 46585 528636 ~ 533666 (+)
G430314 NA non-coding upstream 52269 527750 ~ 527982 (+)
G430313 NA non-coding upstream 53267 526703 ~ 526984 (+)
G430311 NA non-coding upstream 54917 525127 ~ 525334 (+)
G430206 NA non-coding downstream 21170 605291 ~ 608291 (+)
G430170 NA non-coding downstream 24626 608747 ~ 612591 (+)
G430331 NA non-coding downstream 117862 701983 ~ 702194 (+)
G430335 NA non-coding downstream 145782 729903 ~ 730241 (+)
CI01000306_00235686_00242814 NA other upstream 342882 235447 ~ 242861 (+)
G430409 NA other downstream 341423 925544 ~ 999902 (+)
G430452 NA other downstream 566476 1150597 ~ 1150938 (+)
CI01000306_01209847_01210850 ACYP2 other downstream 625612 1209395 ~ 1211232 (+)
G430719 NA other downstream 1564261 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 2389035 2973156 ~ 2979157 (+)

Expression


Co-expression Network