Item | Value |
---|---|
gene id | G430170 |
gene name | NA |
gene type | non-coding |
species | grasscarp (Ctenopharyngodon idella) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | CI01000306 |
NCBI id | null |
chromosome length | 11491657 |
location | 608747 ~ 612591 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
TU493938 | True | 3712 | lncRNA | 0.41 | 2 | 608747 | 612591 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
CI01000306_00571360_00574170 | KITH, TK1 | coding | upstream | 34212 | 571263 ~ 574535 (+) |
CI01000306_00546664_00553895 | MGEA5L | coding | upstream | 54646 | 545665 ~ 554101 (+) |
CI01000306_00534481_00545134 | NA | coding | upstream | 63426 | 534481 ~ 545321 (+) |
CI01000306_00496203_00497820 | CUNH21ORF2 | coding | upstream | 110287 | 496203 ~ 498460 (+) |
CI01000306_00442430_00460709 | NA | coding | upstream | 147564 | 442430 ~ 461183 (+) |
CI01000306_00630572_00641931 | TMC6 | coding | downstream | 17981 | 630572 ~ 642126 (+) |
CI01000306_00664788_00672147 | NA | coding | downstream | 52130 | 664721 ~ 673052 (+) |
CI01000306_00681384_00689565 | NA | coding | downstream | 68793 | 681384 ~ 689812 (+) |
CI01000306_00693218_00693943 | NA | coding | downstream | 80627 | 693218 ~ 694559 (+) |
CI01000306_00705287_00711760 | CLCN4 | coding | downstream | 92696 | 705287 ~ 714524 (+) |
G430206 | NA | non-coding | upstream | 456 | 605291 ~ 608291 (+) |
G430095 | NA | non-coding | upstream | 24626 | 580251 ~ 584121 (+) |
G430189 | NA | non-coding | upstream | 46235 | 558552 ~ 562512 (+) |
G430192 | NA | non-coding | upstream | 75081 | 528636 ~ 533666 (+) |
G430314 | NA | non-coding | upstream | 80765 | 527750 ~ 527982 (+) |
G430331 | NA | non-coding | downstream | 89392 | 701983 ~ 702194 (+) |
G430335 | NA | non-coding | downstream | 117312 | 729903 ~ 730241 (+) |
G430344 | NA | non-coding | downstream | 193926 | 806517 ~ 806752 (+) |
G430389 | NA | non-coding | downstream | 294732 | 907323 ~ 913761 (+) |
CI01000306_00235686_00242814 | NA | other | upstream | 371378 | 235447 ~ 242861 (+) |
G430409 | NA | other | downstream | 312953 | 925544 ~ 999902 (+) |
G430452 | NA | other | downstream | 538006 | 1150597 ~ 1150938 (+) |
CI01000306_01209847_01210850 | ACYP2 | other | downstream | 597142 | 1209395 ~ 1211232 (+) |
G430719 | NA | other | downstream | 1535791 | 2148382 ~ 2150954 (+) |
CI01000306_02974291_02976718 | TP53INP2 | other | downstream | 2360565 | 2973156 ~ 2979157 (+) |