G430170



Basic Information


Item Value
gene id G430170
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information


Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 608747 ~ 612591 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence


>TU493938
CTCATTTTGTGACAGAAGAATGGAGTAATGGATCAGAGTGAATGAGCTTCCCAGAAGAATCAGCACAAGGAAGTTCAGAAAGACCCGAAAGAGGATGAGCTGAACCCAGTGTCTGAGCGATCTCCTCTGGACTCGCTCGTGAAACGTCTGCTCTTCTAGATCCATCTGAAGCAGAGGTCAGAGGTCATCGAGACAATAGGAATACTGTTCCTGTATCTCTCTGAGTCTGACTGATTGTTGATTTCTCACCTTCAGTTCGTTTCTGATGAAGTTTTGTTTCAGTGATGCTGCTTGACGGTCCTGGATGCAGAAATCCCACCCACAGAAAACCTTGTAACTCAGGTTGGAACTGAAGCGACTTCCAGTGAGCCATGAGTGTTTGTAGCCCACCACCGTCCTGAAAGAGAGCAGCGCAGTGGACATCAGTGTACGGAGACCCTAAAGGGACACGGTGATGGACAAAATTATGAGGTCAGAGGAAAAATTTGAATTCATTGCTTTTGTGTTCGCTCACAAATCTTTTTTCATTCCTCAAAGAAACAATTTCCCCAAAGTTCTACCAAGAAACTTTTCATCCACTCAAAAAACGTTTGTGTTCTACTGAGAAACTTTGCGTTCGCTCACGAAACTTTTTAATTCTACCGAGGATCTTTGCGTTCGCTCACTAAACTTTTTAATTCTACCGAGAATCTTTGCGTTCGCTCACGAAACTTTTTAATTCTACCGAGAATCTTTGCGTTCGCTCACGAAACTTTTTAATTCTACCAAGAATCTTTGCGTTCGCTCGCTAAACTTTTTAATTCTACCGAGAATCCTTGCGTTCGCTCACAAAACTTTTTAATTCTACCAAGAATCTTTGCGTTCGCTCACTAAACCTTTTAATTCTACCAAGAATCTTTGCGTTCGCTCACTAAACCTTTTAATTCTACCAAGAATCTTTGCGTTCGCTCACTAAACTTTTTCATTCTACCAAGAAAACTTTTGCATTCTACTGAGAAACTTTGCTTGCTTTTTAGAATTTGTAAAATATTTTGCATTCTCAAAACATTTGCGAGCGAATGCTGAGGTTCTCTGAGAGTTTTGCGAGTGAATGCAAAAACATTGAAATTATTCTCATATTTCTTTTCCATCACAATGTCCCTTTATGGGGTCCATATTTATGAAGCTATTCTCTACAAATCAGATGAGAAATGATTTCACAGATACATGTTATGAATGTTCCCAGTTCAACAGCTGTTAAATTCTATGCACAGCATTTGCAAACTTAGAGATGAGTTTAAATGATTTTCTGTAGTTTTAGACATTATGCTGTTGATATAGTCTATGGTTATAGCGCCACTTAGTGGTCAAGAGCAGCAAATGCATGTTGCTGCTGAAATCACTTATTCTGAATGAGCAGCATCTCCATCTGTAACTTGAACCAGGAACAACTCATTTAACAGCTCAGGGGTGAATGATCTGACCTGCGGACCACCATGATGATGCTGAGGAATAGGACAGAGATCATGCCAAGTAGAAAGAGGATCGGAGTGTTTAAACAGTCGAAATCAAGAGACCCACGAGTGTAGAAACTATAAAACACTGAAGAGTTTTCAAGAACACCCTGAAAAAGACAGACAACAGACCCGGAAGAGAAGAGAGTGTGTTTAGAGAGAGAAAAACAGCATGCCGAGTGTTAAAGACAGCTGAAGAAAATAAGACCATGACCTTGTTTACATGCTCAAGAAAGTACATCAAATAAACACAATTGCTGTAAACAATTAGGACAATATTAACAGAAATCTCCATACATTCATCTATATCTGTGCATGTCAAACAAAAGCAACAAGCAGATGTGAAAAGTCAAGCAATAGAATAAAAACAGTTTTTACTACATTAACAGAAAGAATATAACTCAATATAAAGACAAATGCAGTATAACAAGCCACATGACTTATTGTGCTCTCTGGTCATAGTGAGTGAGTTTTCAATTATAGTAAATTAATTGATTAAATAAAATCTAAACATGATTGTCAGTGTGGAAATTAGAGAGCGATCATCATAAAATGACTTACCGATCCAACAAAAATGTCTTTATATCCAAGGGGTAAACTCTGATAGCCTAAAAAAAATCAAATAACTCTGTTTTTATTTGACATTAGATCAGTTTTAGTGCATCATGTTTAACTCTAAAAGCCCGTTCACACCAAAAACGATTATTATAATGATTAGTGTTCACACCAAGGACAATAACAGTAAAGAAATAGTTCTAAAAATCGTTCTAAATATAAAAGAACAGCAGATTCCACAACGATAACGGCACAGTGAAACAATATCGTTAGAATCACATTCAGAATGATTTGAATGAATAATAAAAACATTGACAGCCAATCAGAATCCATCCTGCTTCAGAGCTCGAGCATTTAAAGGTACAGTAAGCAATTTCTGAGAAACGCTGTTGATATTTGAGATCAACAAAACAGACACGCCCCTACCCAAAAGGATCACACCCCCAACTTTATAGCCCCGCCCTCAAATTCACAAACACTCTATGCTGCACAGGCACCTCCCCCCTAATGAGTGGACACGCCTCTTACTGCTGATTGGCTACAAGTGTGTCGTGGCGCTCGGTCCACTTTCAACAGTGTTTTTCAGAAATCGCTTACTGCACCTTTAAAGCGACAGAACGATATTGCGCTGGTGTGGATGCTAATATGATTATCATTATCTTTATAGTTATTGGTACGGACAAGCCTTAAATGCGCACTGCAGTTTCTGTCACTTTAAATATTCAAGCTCTTAAAGCAGGATGGATTCTGATTGGCTGTTGTTCAGTAATTGTTATAGCTCTAAAAATTATAACAATTTTTAGAGCTATATCGTTATAGTTATCCTACTTGGTGTGAACGGGCCTTTTAAGAGACAGCAGACCCTCACTGTTCATACTCAAGTTCTCCCTGAACACCAGCGTCGGCGTCAGCACAGTTCCGGCGATGATGACGCAGTACAGCAGGTTTAAACACAGCAGGTACCGCAGGAACACAAAGTACGCCTTCACCCCGACACCAAACTGACCTGTAGACCAGATCAGGTGCGGTTAACCGCTCTGTCATCATCTACTCGCCTACACATCATTAACATACTCAACAGTCACCTTCAATCTTATGGAGCGTGTGACTCCATGGCAACAGTCTTGAGAGGGCCCCGCCCACATGCTCCTTTATGCGCCGCCATGTGGTTTGCTGGCTCCGCCTCCACGATTCCCAGTTGCCAATGCTGTGTCTCTGCAGGTTCTGCCGCTCTCTGATTGGCACAAACAAAACTCTGAAACACTGAGATTGACCACTAGATGGTGACATGTCTGTGTATAATTCACACAAACCACTACTGATAATACAAGGTTTGAAGGATCCCCAATATAGGCTAAGATATTTCTGTATTTCTGCTGTATGAAATATATATCAAAATATCATTCTGCATCCTGCATCTTCTTTGTAACTGAAGGTATTCTCAGTCACCTGATGTCTTTCTTGTCCTGCAGACAGACAGGCAGAGCTCTGAGCGGCACGCTGGGGTTCCAGGAGACTCTGTCCAGGTGAAAACTCTCATCCAAATCATGTGTGACGGCGTCTGCGTGAATCCGTCGATGAGCCTGTGAGCTCGGCAACAGGCCGAATATCTCAGTCTGATAATATTCGCATGAGTCGCTGGACAGATCCGAGCTGCAGCTGTC

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA


RNA id representative length rna type GC content exon number start site end site
TU493938 True 3712 lncRNA 0.41 2 608747 612591
Loading

Neighbor


gene id symbol gene type direction distance location
CI01000306_00571360_00574170 KITH, TK1 coding upstream 34212 571263 ~ 574535 (+)
CI01000306_00546664_00553895 MGEA5L coding upstream 54646 545665 ~ 554101 (+)
CI01000306_00534481_00545134 NA coding upstream 63426 534481 ~ 545321 (+)
CI01000306_00496203_00497820 CUNH21ORF2 coding upstream 110287 496203 ~ 498460 (+)
CI01000306_00442430_00460709 NA coding upstream 147564 442430 ~ 461183 (+)
CI01000306_00630572_00641931 TMC6 coding downstream 17981 630572 ~ 642126 (+)
CI01000306_00664788_00672147 NA coding downstream 52130 664721 ~ 673052 (+)
CI01000306_00681384_00689565 NA coding downstream 68793 681384 ~ 689812 (+)
CI01000306_00693218_00693943 NA coding downstream 80627 693218 ~ 694559 (+)
CI01000306_00705287_00711760 CLCN4 coding downstream 92696 705287 ~ 714524 (+)
G430206 NA non-coding upstream 456 605291 ~ 608291 (+)
G430095 NA non-coding upstream 24626 580251 ~ 584121 (+)
G430189 NA non-coding upstream 46235 558552 ~ 562512 (+)
G430192 NA non-coding upstream 75081 528636 ~ 533666 (+)
G430314 NA non-coding upstream 80765 527750 ~ 527982 (+)
G430331 NA non-coding downstream 89392 701983 ~ 702194 (+)
G430335 NA non-coding downstream 117312 729903 ~ 730241 (+)
G430344 NA non-coding downstream 193926 806517 ~ 806752 (+)
G430389 NA non-coding downstream 294732 907323 ~ 913761 (+)
CI01000306_00235686_00242814 NA other upstream 371378 235447 ~ 242861 (+)
G430409 NA other downstream 312953 925544 ~ 999902 (+)
G430452 NA other downstream 538006 1150597 ~ 1150938 (+)
CI01000306_01209847_01210850 ACYP2 other downstream 597142 1209395 ~ 1211232 (+)
G430719 NA other downstream 1535791 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 2360565 2973156 ~ 2979157 (+)

Expression


G430170 Expression in PRJCA010000

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The chart has 1 Y axis displaying values. Range: 0 to 0.125.
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G430170 Expression in each Bioproject

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G430170 Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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Co-expression Network