Gene
RNA
| Item | Value |
|---|---|
| gene id | G431576 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 699919 ~ 700243 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU495509 | True | 325 | lncRNA | 0.30 | 1 | 699919 | 700243 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_00646585_00650863 | GNB4, GNB1, GNB2, OL-GB1, GNB1A, GNB1B | coding | downstream | 49056 | 646572 ~ 650863 (-) |
| CI01000306_00602711_00614050 | NA | coding | downstream | 85517 | 602691 ~ 614402 (-) |
| CI01000306_00588975_00600403 | NA | coding | downstream | 98573 | 588962 ~ 601346 (-) |
| CI01000306_00575882_00583996 | SYNGR2B | coding | downstream | 115481 | 575693 ~ 584438 (-) |
| CI01000306_00566977_00570868 | NA | coding | downstream | 128884 | 566977 ~ 571035 (-) |
| CI01000306_00701052_00701714 | NA | coding | upstream | 694 | 700937 ~ 701714 (-) |
| CI01000306_00717778_00722360 | NA | coding | upstream | 17376 | 717619 ~ 722360 (-) |
| CI01000306_00815374_00840697 | NA | coding | upstream | 114755 | 814998 ~ 840697 (-) |
| CI01000306_00879678_00883167 | NA | coding | upstream | 179260 | 879503 ~ 883182 (-) |
| CI01000306_00896923_00897303 | NA | coding | upstream | 196674 | 895082 ~ 898523 (-) |
| G431475 | NA | non-coding | downstream | 38774 | 660044 ~ 661145 (-) |
| G431568 | NA | non-coding | downstream | 178368 | 520960 ~ 521551 (-) |
| G431556 | NA | non-coding | downstream | 281877 | 417797 ~ 418042 (-) |
| G431551 | NA | non-coding | downstream | 289204 | 410428 ~ 410715 (-) |
| G431550 | NA | non-coding | downstream | 290197 | 409457 ~ 409722 (-) |
| G431486 | NA | non-coding | upstream | 12664 | 712907 ~ 714529 (-) |
| G431618 | NA | non-coding | upstream | 83724 | 783967 ~ 785240 (-) |
| G431611 | NA | non-coding | upstream | 156885 | 857128 ~ 868493 (-) |
| G431639 | NA | non-coding | upstream | 207111 | 907354 ~ 946054 (-) |
| CI01000306_00482506_00494090 | PFKLB, PFKL | other | downstream | 216270 | 482482 ~ 494090 (-) |
| G431706 | NA | other | upstream | 462784 | 1163027 ~ 1163338 (-) |
| G431814 | NA | other | upstream | 611459 | 1311702 ~ 1312434 (-) |
| CI01000306_01723684_01726043 | MAFGA, MAFGB, MAFG | other | upstream | 1017690 | 1717933 ~ 1726043 (-) |
| G432022 | NA | other | upstream | 2299993 | 3000236 ~ 3003891 (-) |
| CI01000306_04544349_04545034 | NA | other | upstream | 3842480 | 4542723 ~ 4545244 (-) |
