XLOC_012790


Basic Information

Item Value
gene id XLOC_012790
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 21469636 ~ 21473364 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027109
ATATAATCTGTGGAAAccatataaaatttactttattattgCAGCCAGCCAAGGAATTCAAAAGTAATGGGTAAATTCTACATATGCTACCCATTCGTCAACAGTAACAACCATCACATAGAAAAATTCAGTAAAGTATACCCCCAAACCGTGAGTTTATTGCTTGAAATTGCGCATGCGTCAGCCCGCGTTTTTGAGTGAGAGTTGACGACGCTGGATCTTCTCACCGGCTGCCATGATCGAACAAACAGCAGAAATTAAGGTAAGCAATTTTACATGCTGTATATTGCGCAAATGCAATTGTATTTTTTGAAGTTATGAGATATTACACTTCACTTGTATTAGGCGTTCGTTTGTTTAAAATGCCATTTCTTAAAATTAAAGTTTGAAACTGTCGCTGGCGTCACCGTGGCCCGGGACACACTAAGCCGACAGCAGGTGGTGCAACGTCGGCCACTCGGTCAGGCGAGTTGGTATTTTGTGTTCACGCATCGGTTAGATGTGCCAAGTGCCATCGGTTTGGTGTGTCCGGGGCTTTAGCTGTCTGCACAACTGCCGGTAAGCGGGGTTAGGTTGGTTTTGTTTTCCGATactcctgacacattcagacggtcccttaccgAGCATGAGGCGCCAcgcagcgcgagctctcccggcaaCTGTTAAACGCAGATTCCGAGGGCTTGAACGAAGCAGTGCTCGTAAtttcgagcgaaaaaaaagaaaaagacagctgtgaattATAAccagctttgtatttttgtaggaaacacagtttagatattttagggtaagaggtttttgagttattgccgtccaTCACTGAAcctgtcaggaatatcgaaaacaaaaccaacttaacccctctCTGCCGGTATGTGGTCGTGGTGTGCTTTTTACAAGATTAGTCAGCATGCAAGACTGTGTCTGACCGCTGGTTTTAAGGTTAGAAACTAGTCAACTCCAGCATTTACTAATAAGTAATATTGAATGGGAAGaggattaaaaatgaaaacatagtGTATCCCACGAGTATGTGGGAAAACACCCACTGCTGCACCTATGTTTTTAACGAATTGTGGGATCACGCAAAACATCTTAGAActgattttatattatattttgtattttagaaCATCAGTgcttaataaatgttttcataatCTGGTCATATGTTTTATGAGGCATATTACATATATGATGCTTATTAAATGAAGCATAGatattaatatatgtaattttaatgcctttatttttgtaaattaagtACACAGTCTGTTATTTCTGCATAACTGACCCTTGTCAAACAGCCTTGATCAGAGAAGCAGAGATAAACTACCGTATTTCCCCAATTAATCGCCATTCTGAAAATAGTTCTTTTAAATGCCTGGGGTTATAATTCATTTTTGCGTTTTAAACACCCACCCGAATAACCCCCAGTGGTGATTATATACATTAAATTGTGTAAACACAAAATCAACTGTTTAAAATTTAAGCGAGGTACATGTCTGATAATTTCTTTtgtgtaattttcatttttatttctgttgcagGCAGAGTCTGTATATGTGGACACTCACTATTTGCCCTCGCTACAGTTTCTCTTGTCTGTCCCCCACAAGCAGAGACCCACTGATAGACCGCTGTTACCAGTTCTAGGGCTGACACATCCGCACACGTCCACATCACAAGTGTATCCTGTAAAGGTATGCAagttttccaaataaaataaatcacattgtCCTTAAAGGTCCTTAACGAAAGTCTTCAGTTATGGAAAAATGAAATGGAAAtgcaatttataaaataaattaaaaatgaataaaaccttCTCTAGCCAAAGAATTGAAGTGGTCAGTCTCAGCCCCTCTTTTGGTGGGTTTAAAAAAAGGTATTATTCACTGAGGCTCAggtgaaaatgtttaaaatagattttaaataataatattttttcttccaactAAGATACTTTCATGTGATATATATGAGATCTGGTTTgtgatttaaaataacatttttggtcCTTTTACTTCCTAGATCAAGGAGGAGCATCACAACAGTTTCGTTGAAGTAGACATTCTAGTGGAAGCTTGATGAGTACACACCAGGTTTTGCAGCTAATGCATGCCAAAGGAGGAGCAGCTAGTTGCAAGATGCATCCTCTGCTGGACAGTTTaaatgtatgttattttattttttttacaaatatataattattgaTATGAGGGAATTAAAAGTGAAATCATTTGTAAAAAATTGCTTTAAGTTGAGCTCCATACCAACTTAAACTACCTTTTAACATCAATGTGTAAATTGATTTTCTTTACTGCTTTATCCATTTGGGTCATGAGTAGCTTGAGACAACCAAGCATTTATCAGGCAAAGGGGCAGGGTTCACTCTGTACAGGTCGCCAGTCTATTCCTGGGCCAGAATATGGTCTTAATATATGTAAATCACTCCCACACTAAATTGTGTCTCCCTACAGACACAGAACATTGAGGAAAAAAGAGATGCTGTTGTCTGCTGCCTCAGTAACTACCTTGGGAAAGACAAGAAGATATGTTCCATGACTGGCAGGTATGTCATATTGATAACAGATTCTTAATCAACTCAAGTGATCCTCCTCTTATATCCCCCTTCTCCTTTTGTCTTCTACTCTCCTCTGCTCTCCTTTAGATAAACTGAAATATATTGAAACagaatcttaaaataaaattgtgtttgccttttgtttgtttcattttaatgtagGAATGTGAGGAGTACACAGACAAAACGATGAAGGAGATTGTGGAGCACAATTTGTCTATTGCGATCGGGGGAAAACAAGTGATTGAAGAATGGGGAAGCCAAACAGAGGCATGCATACTGCTGGGACTCATATGCAATTAACATTGAATATCCAAAGGAGCTGAAGAACACGTTTGAAGCTTTTCAAAAACTTTGTTTTAGAAAATGATGGGGCAAAACTACTGAAGAAGGTCCACAGCCTCAAAAATAAGCTCATGCAGTAGACATTTCTCCTTTTATTTGAAGAGGATCTTTTGTTTGGACATGCCTTGATGGAGTTGTAATggagtgttttatatatttttttctcttccatCATTTGCTTCACACACAAAGACCCATCCACTGTCTCTCAGCCCTCTCCATTGCTCTGTGTTTTCCCCCATATTTCCTATACAGAAAAGGAATACTAATAGAAAGTGGCCTAAAGAATTTTGATCTCACCTACCGTCTTTTCTTCCccattggtttatttattttattctcatCCTATCTGCGAGAGTGAGAGTAAggacaaaaaataaagaattttgttttacttttatccGGATATTTGATACTGTACATGCACAAAAACAACcacaagtctgtgtgtgtgcttttggcTTTTAAAATAGAATAAGTGACCTTTGAAGTTTTGTATGCAAGTAGCCAATTACCagaaaaaacttttgaaaatgagtatagtgagttataaaacaggtttatttgttcattgttgtGTGAAGCTGTTGTACTTTATTTAGCACTCTTttctgtgttttaatattttGGTGTCCTAAAACaggtatatgttttattattcaacATTATTGACACATTTGATAGATCAgtgagttataaaacaggtatatACTTGAAATGTTGTGTAAAGCTGTTGTGCTGCACTATATTTTGAGTGTGTTTTAGGATTTTTTTGAATAAAACATTAAGTTGAT
>TCONS_00027110
ccgtccaTCACTGAAcctgtcaggaatatcgaaaacaaaaccaacttaacccctctCTGCCGGTATGTGGTCGTGGTGTGCTTTTTACAAGATTAGTCAGCATGCAAGACTGTGTCTGACCGCTGGTTTTAAGGTTAGAAACTAGTCAACTCCAGCATTTACTAATAAGTAATATTGAATGGGAAGaggattaaaaatgaaaacatagtGTATCCCACGAGTATGTGGGAAAACACCCACTGCTGCACCTATGTTTTTAACGAATTGTGGGATCACGCAAAACATCTTAGAActgattttatattatattttgtattttagaaCATCAGTgcttaataaatgttttcataatCTGGTCATATGTTTTATGAGGCATATTACATATATGATGCTTATTAAATGAAGCATAGatattaatatatgtaattttaatgcctttatttttgtaaattaagtACACAGTCTGTTATTTCTGCATAACTGACCCTTGTCAAACAGCCTTGATCAGAGAAGCAGAGATAAACTACCGTATTTCCCCAATTAATCGCCATTCTGAAAATAGTTCTTTTAAATGCCTGGGGTTATAATTCATTTTTGCGTTTTAAACACCCACCCGAATAACCCCCAGTGGTGATTATATACATTAAATTGTGTAAACACAAAATCAACTGTTTAAAATTTAAGCGAGGTACATGTCTGATAATTTCTTTtgtgtaattttcatttttatttctgttgcagGCAGAGTCTGTATATGTGGACACTCACTATTTGCCCTCGCTACAGTTTCTCTTGTCTGTCCCCCACAAGCAGAGACCCACTGATAGACCGCTGTTACCAGTTCTAGGGCTGACACATCCGCACACGTCCACATCACAAGTGTATCCTGTAAAGATCAAGGAGGAGCATCACAACAGTTTCGTTGAAGTAGACATTCTAGTGGAAGCTTGATGAGTACACACCAGGTTTTGCAGCTAATGCATGCCAAAGGAGGAGCAGCTAGTTGCAAGATGCATCCTCTGCTGGACAGTTTaaatACACAGAACATTGAGGAAAAAAGAGATGCTGTTGTCTGCTGCCTCAGTAACTACCTTGGGAAAGACAAGAAGATATGTTCCATGACTGGCAGGTATGTCATATTGATAACAGATTCTTAATCAACTCAAGTGATCCTCCTCTTATATCCCCCTTCTCCTTTTGTCTTCTACTCTCCTCTGCTCTCCTTTAGATAAACTGAAATATATTGAAACagaatcttaaaataaaattgtgtttgccttttgtttgtttcattttaatgtagGAATGTGAGGAGTACACAGACAAAACGATGAAGGAGATTGTGGAGCACAATTTGTCTATTGCGATCGGGGGAAAACAAGTGATTGAAGAATGGGGAAGCCAAACAGAGGCATGCATACTGCTGGGACTCATATGCAATTAACATTGAATATCCAAAGGAGCTGAAGAACACGTTTGAAGCTTTTCAAAAACTTTGTTTTAGAAAATGATGGGGCAAAACTACTGAAGAAGGTCCACAGCCTCAAAAATAAGCTCATGCAGTAGACATTTCTCCTTTTATTTGAAGAGGATCTTTTGTTTGGACATGCCTTGATGGAGTTGTAATggagtgttttatatatttttttctcttccatCATTTGCTTCACACACAAAGACCCATCCACTGTCTCTCAGCCCTCTCCATTGCTCTGTGTTTTCCCCCATATTTCCTATACAGAAAAGGAATACTAATAGAAAGTGGCCTAAAGAATTTTGATCTCACCTACCGTCTTTTCTTCCccattggtttatttattttattctcatCCTATCTGCGAGAGTGAGAGTAAggacaaaaaataaagaattttgttttacttttatccGGATATTTGATACTGTACATGCACAAAAACAACcacaagtctgtgtgtgtgcttttggcTTTTAAAATAGAATAAGTGACCTTTGAAGTTTTGTATGCAAGTAGCCAATTACCagaaaaaacttttgaaaatgagtatagtgagttataaaacaggtttatttgttcattgttgtGTGAAGCTGTTGTACTTTATTTAGCACTCTTttctgtgttttaatattttGGTGTCCTAAAACaggtatatgttttattattcaacATTATTGACACATTTGATAGATCAgtgagttataaaacaggtatatACTTGAAATGTTGTGTAAAGCTGTTGTGCTGCACTATATTTTGAGTGTGTTTTAGGATTTTTTTGAATAAAACATTAAGTTGAT

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0048731 system development biological_process
GO:0016070 RNA metabolic process biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0021546 rhombomere development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0034470 ncRNA processing biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006364 rRNA processing biological_process
GO:0021575 hindbrain morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:1990399 epithelium regeneration biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0071599 otic vesicle development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0006396 RNA processing biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009611 response to wounding biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0060429 epithelium development biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0048589 developmental growth biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0042246 tissue regeneration biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0031099 regeneration biological_process
GO:0040007 growth biological_process
GO:0048641 regulation of skeletal muscle tissue development biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0061053 somite development biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0032502 developmental process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0030902 hindbrain development biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0060322 head development biological_process
GO:0042060 wound healing biological_process
GO:0009790 embryo development biological_process
GO:0030684 preribosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0005488 binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027109 False 3729 lncRNA 0.37 1 21469636 21473364
TCONS_00027110 True 2280 lncRNA 0.36 3 21470448 21473364

Neighbor

gene id symbol gene type direction distance location
XLOC_012788 hydin coding upstream 68235 21273749 ~ 21401401 (+)
XLOC_012787 BX571884.1 coding upstream 277852 21191665 ~ 21191784 (+)
XLOC_012786 NA coding upstream 299888 21163424 ~ 21169748 (+)
XLOC_012785 chka coding upstream 324262 21122818 ~ 21145374 (+)
XLOC_012784 kmt5b coding upstream 349418 21113216 ~ 21120218 (+)
XLOC_012791 ranbp10 coding downstream 478187 21951551 ~ 22020509 (+)
XLOC_012792 CT573204.1 coding downstream 604780 22078144 ~ 22081753 (+)
XLOC_012793 NA coding downstream 626255 22099619 ~ 22100228 (+)
XLOC_012794 zgc:158868 coding downstream 636015 22109379 ~ 22116378 (+)
XLOC_012795 si:ch73-186j5.2 coding downstream 649708 22123072 ~ 22127985 (+)
XLOC_012781 BX548061.1 non-coding upstream 446035 21021699 ~ 21023601 (+)
XLOC_012772 NA non-coding upstream 1092701 20328119 ~ 20376935 (+)
XLOC_012771 NA non-coding upstream 1144415 20316443 ~ 20325221 (+)
XLOC_012805 NA non-coding downstream 1985565 23458929 ~ 23463541 (+)
XLOC_012806 AL805905.1 non-coding downstream 1998782 23472146 ~ 23472260 (+)
XLOC_012807 NA non-coding downstream 2338020 23811384 ~ 23828058 (+)

Expression


Co-expression Network