Gene
RNA
| Item | Value |
|---|---|
| gene id | G430397 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 1082528 ~ 1084265 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU494191 | True | 1738 | lncRNA | 0.38 | 1 | 1082528 | 1084265 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_01047698_01080329 | TMEM63A, TMEM63B | coding | upstream | 269 | 1047698 ~ 1082259 (+) |
| CI01000306_01008614_01011977 | RALB.S, RALBA, RALBB, RALB.L, RALB | coding | upstream | 70551 | 1008614 ~ 1011977 (+) |
| CI01000306_00887579_00889885 | NA | coding | upstream | 191820 | 887190 ~ 890708 (+) |
| CI01000306_00730637_00781399 | CLASP1 | coding | upstream | 301129 | 730637 ~ 781399 (+) |
| CI01000306_00705287_00711760 | CLCN4 | coding | upstream | 369943 | 705287 ~ 714524 (+) |
| CI01000306_01209847_01210850 | ACYP2 | coding | downstream | 125130 | 1209395 ~ 1211232 (+) |
| CI01000306_01224349_01255175 | NA | coding | downstream | 139885 | 1224150 ~ 1255472 (+) |
| CI01000306_01278230_01279369 | NA | coding | downstream | 193965 | 1278230 ~ 1279484 (+) |
| CI01000306_01293889_01308316 | SPTBN1 | coding | downstream | 209403 | 1293668 ~ 1308316 (+) |
| CI01000306_01308428_01312462 | SPTBN1 | coding | downstream | 224163 | 1308428 ~ 1312870 (+) |
| G430433 | NA | non-coding | upstream | 11301 | 1070368 ~ 1071227 (+) |
| G430425 | NA | non-coding | upstream | 37420 | 1033220 ~ 1045108 (+) |
| G430400 | NA | non-coding | upstream | 56425 | 1002858 ~ 1026103 (+) |
| G430419 | NA | non-coding | upstream | 97590 | 984515 ~ 984938 (+) |
| G430389 | NA | non-coding | upstream | 168767 | 907323 ~ 913761 (+) |
| G430434 | NA | non-coding | downstream | 11006 | 1095271 ~ 1095590 (+) |
| G430407 | NA | non-coding | downstream | 32553 | 1116818 ~ 1119768 (+) |
| G430460 | NA | non-coding | downstream | 76717 | 1160982 ~ 1161492 (+) |
| G430462 | NA | non-coding | downstream | 78746 | 1163011 ~ 1163473 (+) |
| G430467 | NA | non-coding | downstream | 83747 | 1168012 ~ 1168563 (+) |
| G430409 | NA | other | upstream | 82626 | 925544 ~ 999902 (+) |
| CI01000306_00235686_00242814 | NA | other | upstream | 845159 | 235447 ~ 242861 (+) |
| G430452 | NA | other | downstream | 66332 | 1150597 ~ 1150938 (+) |
| G430719 | NA | other | downstream | 1064117 | 2148382 ~ 2150954 (+) |
| CI01000306_02974291_02976718 | TP53INP2 | other | downstream | 1888891 | 2973156 ~ 2979157 (+) |
| CI01000306_03772689_03777211 | DYNLRB1 | other | downstream | 2689879 | 3772689 ~ 3777550 (+) |
