G430407


Basic Information

Item Value
gene id G430407
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1116818 ~ 1119768 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU494203
AGTGACAAATTTGGGGAGAGGAAAAATATTCCAAAACTTTCTGAAAATACAATATGAAAATTAACTGCACAATTACTAGAAATGTGTACCTTGGATATTATACAATTTGCACACATACAAAATTTGTGGAAAAAAACATTTTTTTCAAGACGTTTCCAGCTCTGACTTTGAACCAGCTCTGTAGAATAGCTTTCTATTAATCAAAGAATCCTGAAAAATATTTATCCCGGTTTCCACAAAAATATGCTGCACAACTGTTTTCAACATTGATAATAATCATAAATGTTTCTTGAGCATCAAATCATCATATCAGAATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCCTTGATCACAGGAATAAATTACACTTTACTATATATTCACATAGAAAACAGCTGATTTACATTGGAATAATATTTCACTGTTTTTACTGTATTTTTGATCAAATAAATGCAGCCTTGCTGAGCATTCAGAAACATCTTTACCTCAAACTTTTGGGAGCAATGCATGTTTATGTGCTACCAGACCCAGTTACAGGAATACCTGATGTCACAGTCACATATCAGTCATTCACAGCGGTGTTTATCAATCCCTGTACCTATAAAATGCATCAGTCAAACCCACATCAGCTGTTTTACTGCAGTTATAAAACCATTGAGCCATATTCATATGCGATATATTGTAGACTTTGTAGCAGCCAACTTTAATATGCCTCTTAAATGGACCACAGGGCTGTTTAGATTTACATCGTATATATTATATAGTGGCCTACATGTTCCTGTTTTTGGTGACATTAGTCTGAAATTGGATTAAATTGATGTCTGTCGGATGAGCACTTTTCTGCATTTCCTCACTGATCGTCTTGTTTTGACAAGAAAACTCTGCGCGTTGCTAGCAGTTCCAGGATGTGCCGTTCATGTAGGGGTCATCTGCTGTTCACATCAACACGGCTGTAATTAGACTTCATTAGGAGTGATCATTACGAGTCTAATGGCATGGCTGCGTTTAGAATAGCATATACACATACTATTTTTGCAATATACATTGTGCACAATGTGTGCAAATTAGCGTAATGGATACAGGACTTCTTACAAACTGTAATTGCCAAAATGAATTGCATTTCCACAATGCAATGCACCTGATGTGACTTTCCACTTCTGGTGCGATCAAATGAACCGGAAGTAATAGCTATGGAAGCTTGTTTCTGCCAGAGAATAAAAAAAAAAAAAAAGTATTTGCGATAAACTTGCAATTGCGATTTTATATCCAGCAAATTTGACTTTTTTCTCAGAACTGCGAGATATAAACTCACAATTGTGAGTTATAAAATCCCAAACAATTCTGACTTTTTTTCTTGCAATTTGAGCGTGTTTCTTGACAATTATGAAAAAAAAGAGTCCGAATTGTGAGATAAAAAGATGCAGTTACCTTTTTTATTTTCTAATTCTGTGGTGAAAACAAGCTTCTAGAGATAACAACTGTGATTCTTACACTGCTGGGTTAAAAACAACCCAGCAGTTGTTTTCACCTTTTATTATTGTTGCCTCTAGTAATTATGTGTCTGATTTTTAATTTCCAACCTATCTTTGGGTTCATTTTAAGCCAGACATACAGTCAATTTTAAACAATAGTTGAGTTAAATAAAACTGCCCAGCAGGTTGGACAAACATTTAACCCAACCGCTGGGTTAAAACAACCCAATTGTTGGGTTTATCCATTTCCAACCCAACTTGGGTTGTTTTTAACCCAGCATTTTTTTAATGTAATATCTCCTTTTTGACAGAATTTGACAACCATATTGATCCTCGCTGCAACCATATTTAATGTAGTTGGAGTCATATTTTATTTTATCTTGTGTTGGTTTTTGAGGACTATTTTGAGGTCCCACATCCTGTCCATGTTTATATCTATTAATTTGATGAGCTTGGTGGCACTTTATTTTACACTCCTATTCCGCATGAACATACTACAGTTATGTACTAATTATAGCAATTACAATAACTGGGTTGTAACTAGGTACTAACCCTGATCCTAACCCTAAACCTTAACCCATGTAGTTTGTTTATATTACCAGTACTTTCTTGGTATTTTCTAAGTACACTGTAAGTACACGTACTGTAAAATTGTGTAACCACGTGCTTCTACCAACTGACGTGAATTTGTTTGACTGGACACTGGGGGTTTAACGGTACATGTATTCGTCACGGTTCAGGGCATACAGTCAGATGATGAATACAGTCAGTCAGAGGCAATCCACACTCCAATCCAGAAGGGGGCGTGCGCGGTAATGCAACGCTGTTTGCAAACAGCCACAACAGGAAAAAGAGCAGAAGAAGAAGAGACGATCAATGCACCAACCCAAAACGGGCACGCAAGAGCTTGCTAGTAGCCTAAACGCTGAGTTCCGATTAATTTTTGTGACGCGCTCCACAAACTTGACGGAAGGGAAACTGGGACGGCAGAAAGCAGCATCCTTCTTTATTTTACAAAAGCACAATGTTTTGTTGTTATTGTGAGTGTACACAAACCCTTTACAGTTCGGAATGATGTCTTACTTTTATCTGTATGACCATAAATGACGGAGTATTTTAAGTTGTTTCTGCTGTTATAATGAGACAAAATCTTTTGGCATTGTACCAATTTGTGTCGTGGACGTCTCACTACAGTCCAGTGATGAAATATGTGTGTCCTGGGAAGCCTCAGGTGTCGCTTCAATCGCTGTCTCCTCGTGGAAAAGTGAAGTAGACTCTTTTTCTCGTCCGTGATGTCTTGAAAAAGCGTAATATTTCGCATCCATCATTGTCACCACATGTTAATGAACCCTCGTGCGCAAAGAAAACTAATCTCTGCACAAGTTTCATTATTCTATTTATTCTGTACTTTTATAACACGAGATGCTTTTCAGATTTGTGGCTGATTGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU494203 True 2951 lncRNA 0.37 1 1116818 1119768

Neighbor

gene id symbol gene type direction distance location
CI01000306_01047698_01080329 TMEM63A, TMEM63B coding upstream 34559 1047698 ~ 1082259 (+)
CI01000306_01008614_01011977 RALB.S, RALBA, RALBB, RALB.L, RALB coding upstream 104841 1008614 ~ 1011977 (+)
CI01000306_00887579_00889885 NA coding upstream 226110 887190 ~ 890708 (+)
CI01000306_00730637_00781399 CLASP1 coding upstream 335419 730637 ~ 781399 (+)
CI01000306_00705287_00711760 CLCN4 coding upstream 404233 705287 ~ 714524 (+)
CI01000306_01209847_01210850 ACYP2 coding downstream 89627 1209395 ~ 1211232 (+)
CI01000306_01224349_01255175 NA coding downstream 104382 1224150 ~ 1255472 (+)
CI01000306_01278230_01279369 NA coding downstream 158462 1278230 ~ 1279484 (+)
CI01000306_01293889_01308316 SPTBN1 coding downstream 173900 1293668 ~ 1308316 (+)
CI01000306_01308428_01312462 SPTBN1 coding downstream 188660 1308428 ~ 1312870 (+)
G430434 NA non-coding upstream 21228 1095271 ~ 1095590 (+)
G430397 NA non-coding upstream 32553 1082528 ~ 1084265 (+)
G430433 NA non-coding upstream 45591 1070368 ~ 1071227 (+)
G430425 NA non-coding upstream 71710 1033220 ~ 1045108 (+)
G430400 NA non-coding upstream 90715 1002858 ~ 1026103 (+)
G430460 NA non-coding downstream 41214 1160982 ~ 1161492 (+)
G430462 NA non-coding downstream 43243 1163011 ~ 1163473 (+)
G430467 NA non-coding downstream 48244 1168012 ~ 1168563 (+)
G430470 NA non-coding downstream 53918 1173686 ~ 1173906 (+)
G430477 NA non-coding downstream 72749 1192517 ~ 1192719 (+)
G430409 NA other upstream 116916 925544 ~ 999902 (+)
CI01000306_00235686_00242814 NA other upstream 879449 235447 ~ 242861 (+)
G430452 NA other downstream 30829 1150597 ~ 1150938 (+)
G430719 NA other downstream 1028614 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 1853388 2973156 ~ 2979157 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 2654376 3772689 ~ 3777550 (+)

Expression


Co-expression Network