G430462


Basic Information

Item Value
gene id G430462
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1163011 ~ 1163473 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU494260
TGGATTGTGTTCACCGACAATGTTTTCTGGAAGTATTCCTGAGCCCATGTTGTGATTTCCATTACAGTAGCATTCCTGTATGTGATGCAGTGCCGTCTAAGGGCCCAAAGATCACAGGCATCCTGTATGGTTTTCCGGCCTTGACCCTTACGCACAGAGATTGTTCCAGATTCTCTGAATCTTTGGATGATATTATACACTGTAGATGATGATAACTTCAAACTCTTTGCAATTTTTCTCTGAGAAACTCCTTTCTGATATTGCTCCACTATTTTTCGCCGCAGCATTGGGGGAATTGGTGATCCTCTGTC
>TU494262
TGGATTGTGTTCACCGACAATGTTTTCTGGAAGTATTCCTGAGCCCATGTTGTGATTTCCATTACAGTAGCATTCCTGTATGTGATGCAGTGCCGTCTAAGGGCCCAAAGATCACAGGCATCCTGTATGGTTTTCCGGCCTTGACCCTTACGCACAGAGATTGTTCCAGATTCTCTGAATCTTTGGATGATATTATACACTGTAGATGATGATAACTTCAAACTCTTTGCAATTTTTCTCTGAGAAACTCCTTTCTGATATTGCTCCACTATTTTTCGCCGCAGCATTGGGGGAATTGGTGATCCTCTGTCCATCTTGACATCTGAGAGACACTGCCACTCTGAGAGGCTCTTTTTATACCCAATCATGTTGCCAATTGACCTAATAAGTTGCAAATTGGTCCTCCAGCTGTTCCTTATATGTACATTTAACTTTTCCGGCCTCTTATTGCTACCTGTCCCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU494260 False 311 lncRNA 0.43 1 1163011 1163321
TU494262 True 463 lncRNA 0.43 1 1163011 1163473

Neighbor

gene id symbol gene type direction distance location
CI01000306_01047698_01080329 TMEM63A, TMEM63B coding upstream 80752 1047698 ~ 1082259 (+)
CI01000306_01008614_01011977 RALB.S, RALBA, RALBB, RALB.L, RALB coding upstream 151034 1008614 ~ 1011977 (+)
CI01000306_00887579_00889885 NA coding upstream 272303 887190 ~ 890708 (+)
CI01000306_00730637_00781399 CLASP1 coding upstream 381612 730637 ~ 781399 (+)
CI01000306_00705287_00711760 CLCN4 coding upstream 450426 705287 ~ 714524 (+)
CI01000306_01209847_01210850 ACYP2 coding downstream 45922 1209395 ~ 1211232 (+)
CI01000306_01224349_01255175 NA coding downstream 60677 1224150 ~ 1255472 (+)
CI01000306_01278230_01279369 NA coding downstream 114757 1278230 ~ 1279484 (+)
CI01000306_01293889_01308316 SPTBN1 coding downstream 130195 1293668 ~ 1308316 (+)
CI01000306_01308428_01312462 SPTBN1 coding downstream 144955 1308428 ~ 1312870 (+)
G430460 NA non-coding upstream 1519 1160982 ~ 1161492 (+)
G430407 NA non-coding upstream 43243 1116818 ~ 1119768 (+)
G430434 NA non-coding upstream 67421 1095271 ~ 1095590 (+)
G430397 NA non-coding upstream 78746 1082528 ~ 1084265 (+)
G430433 NA non-coding upstream 91784 1070368 ~ 1071227 (+)
G430467 NA non-coding downstream 4539 1168012 ~ 1168563 (+)
G430470 NA non-coding downstream 10213 1173686 ~ 1173906 (+)
G430477 NA non-coding downstream 29044 1192517 ~ 1192719 (+)
G430478 NA non-coding downstream 30275 1193748 ~ 1193960 (+)
G430113 NA non-coding downstream 72872 1236345 ~ 1270115 (+)
G430452 NA other upstream 12073 1150597 ~ 1150938 (+)
G430409 NA other upstream 163109 925544 ~ 999902 (+)
CI01000306_00235686_00242814 NA other upstream 925642 235447 ~ 242861 (+)
G430719 NA other downstream 984909 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 1809683 2973156 ~ 2979157 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 2610671 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 2614579 3778052 ~ 3783019 (+)

Expression


Co-expression Network