Gene
RNA
| Item | Value |
|---|---|
| gene id | G430113 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 1236345 ~ 1270115 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU493881 | True | 1424 | lncRNA | 0.40 | 2 | 1236345 | 1270115 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_01209847_01210850 | ACYP2 | coding | upstream | 25113 | 1209395 ~ 1211232 (+) |
| CI01000306_01047698_01080329 | TMEM63A, TMEM63B | coding | upstream | 154086 | 1047698 ~ 1082259 (+) |
| CI01000306_01008614_01011977 | RALB.S, RALBA, RALBB, RALB.L, RALB | coding | upstream | 224368 | 1008614 ~ 1011977 (+) |
| CI01000306_00887579_00889885 | NA | coding | upstream | 345637 | 887190 ~ 890708 (+) |
| CI01000306_00730637_00781399 | CLASP1 | coding | upstream | 454946 | 730637 ~ 781399 (+) |
| CI01000306_01278230_01279369 | NA | coding | downstream | 8115 | 1278230 ~ 1279484 (+) |
| CI01000306_01293889_01308316 | SPTBN1 | coding | downstream | 23553 | 1293668 ~ 1308316 (+) |
| CI01000306_01308428_01312462 | SPTBN1 | coding | downstream | 38313 | 1308428 ~ 1312870 (+) |
| CI01000306_01315927_01321358 | NA | coding | downstream | 45417 | 1315532 ~ 1322294 (+) |
| CI01000306_01329678_01378388 | EML6, EML5 | coding | downstream | 59563 | 1329678 ~ 1378510 (+) |
| G430478 | NA | non-coding | upstream | 42385 | 1193748 ~ 1193960 (+) |
| G430477 | NA | non-coding | upstream | 43626 | 1192517 ~ 1192719 (+) |
| G430470 | NA | non-coding | upstream | 62439 | 1173686 ~ 1173906 (+) |
| G430467 | NA | non-coding | upstream | 67782 | 1168012 ~ 1168563 (+) |
| G430462 | NA | non-coding | upstream | 72872 | 1163011 ~ 1163473 (+) |
| G430142 | NA | non-coding | downstream | 14575 | 1284690 ~ 1286761 (+) |
| G430182 | NA | non-coding | downstream | 18610 | 1288725 ~ 1289910 (+) |
| G430489 | NA | non-coding | downstream | 52948 | 1323063 ~ 1324428 (+) |
| G430492 | NA | non-coding | downstream | 114519 | 1384634 ~ 1384851 (+) |
| G430497 | NA | non-coding | downstream | 125637 | 1395752 ~ 1395970 (+) |
| G430452 | NA | other | upstream | 85407 | 1150597 ~ 1150938 (+) |
| G430409 | NA | other | upstream | 236443 | 925544 ~ 999902 (+) |
| CI01000306_00235686_00242814 | NA | other | upstream | 998976 | 235447 ~ 242861 (+) |
| G430719 | NA | other | downstream | 878267 | 2148382 ~ 2150954 (+) |
| CI01000306_02974291_02976718 | TP53INP2 | other | downstream | 1703041 | 2973156 ~ 2979157 (+) |
| CI01000306_03772689_03777211 | DYNLRB1 | other | downstream | 2504029 | 3772689 ~ 3777550 (+) |
| CI01000306_03778075_03781910 | MAP1LC3A, MAP1LC3A.L | other | downstream | 2507937 | 3778052 ~ 3783019 (+) |
| CI01000306_03807268_03810946 | NA | other | downstream | 2538118 | 3807268 ~ 3811243 (+) |
