Gene
RNA
| Item | Value |
|---|---|
| gene id | G431823 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 1236441 ~ 1278686 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU495841 | False | 680 | lncRNA | 0.53 | 3 | 1236441 | 1278686 |
| TU495842 | True | 624 | lncRNA | 0.48 | 2 | 1236441 | 1269411 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_01201604_01202608 | FOXG1B | coding | downstream | 32368 | 1200682 ~ 1204073 (-) |
| CI01000306_01120958_01127237 | SULT6B1 | coding | downstream | 108881 | 1120816 ~ 1127560 (-) |
| CI01000306_01109880_01112379 | VIPB | coding | downstream | 123638 | 1109779 ~ 1112803 (-) |
| CI01000306_01086915_01093095 | SLC29A1B | coding | downstream | 143340 | 1086768 ~ 1093101 (-) |
| CI01000306_01024523_01027114 | NA | coding | downstream | 209310 | 1024340 ~ 1027131 (-) |
| CI01000306_01284891_01287606 | NA | coding | upstream | 6137 | 1284677 ~ 1287630 (-) |
| CI01000306_01439864_01463150 | NA | coding | upstream | 161100 | 1439786 ~ 1463150 (-) |
| CI01000306_01469486_01475137 | NA | coding | upstream | 190102 | 1468788 ~ 1475137 (-) |
| CI01000306_01476783_01478195 | NA | coding | upstream | 197978 | 1476664 ~ 1478195 (-) |
| CI01000306_01483485_01492511 | ATL2, ATL2.L | coding | upstream | 204186 | 1482872 ~ 1492511 (-) |
| G431810 | NA | non-coding | downstream | 14081 | 1221861 ~ 1222360 (-) |
| G431792 | NA | non-coding | downstream | 54263 | 1181732 ~ 1182178 (-) |
| G431705 | NA | non-coding | downstream | 74844 | 1160817 ~ 1161597 (-) |
| G431700 | NA | non-coding | downstream | 83919 | 1152309 ~ 1152522 (-) |
| G431699 | NA | non-coding | downstream | 84402 | 1151797 ~ 1152039 (-) |
| G431849 | NA | non-coding | upstream | 832 | 1279518 ~ 1280070 (-) |
| G431852 | NA | non-coding | upstream | 7898 | 1286584 ~ 1286787 (-) |
| G431853 | NA | non-coding | upstream | 11264 | 1289950 ~ 1290345 (-) |
| G431815 | NA | non-coding | upstream | 29345 | 1308031 ~ 1310878 (-) |
| G431706 | NA | other | downstream | 73103 | 1163027 ~ 1163338 (-) |
| CI01000306_00482506_00494090 | PFKLB, PFKL | other | downstream | 752792 | 482482 ~ 494090 (-) |
| G431814 | NA | other | upstream | 33016 | 1311702 ~ 1312434 (-) |
| CI01000306_01723684_01726043 | MAFGA, MAFGB, MAFG | other | upstream | 439247 | 1717933 ~ 1726043 (-) |
| G432022 | NA | other | upstream | 1721550 | 3000236 ~ 3003891 (-) |
| CI01000306_04544349_04545034 | NA | other | upstream | 3264037 | 4542723 ~ 4545244 (-) |
| G433450 | NA | other | upstream | 4082957 | 5361643 ~ 5383763 (-) |
