G430142


Basic Information

Item Value
gene id G430142
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1284690 ~ 1286761 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU493910
TATTTCCCACAATATTCTGTTTTGCCCAAAAATACACGACGATGTTGTCTTTATGAGTACCTTGTTTTGCGCTGCATGTGTTTTTCATCAGCGCTCACATAAACTGCCTCTAAAATCTTTTAAACTTCACGTCTTTATTATTTTTGCCCTCGGTTCAGACTGTGTGTTGTGGTTTTAACCAAAAGTGTTGAAACTCTAGGTTTATTTTCGATCTGCATGCTGCGGCCAGAGCCGAACGTGATACTGTGACCTCAGCGATCTGTCCACTCCGCAGCGCACAGGAAGTCTTAGGAATTCCATTCTGCTGACGTTCACGCCACAGGATGCAGATAAATCTGAGGGAAAGAGGAAGCCACCCATGGACTACCTTTCTTGGTCGTTCCAAGGCTGCGTTCTCATTCGTATTTAATGATTTATCATCTGCTCCAGAAAGTCAGAGGCAAGAGTAGAAAACGTTTCATATGAAAAGCTGATCTCACTTATCTCTGACCCCAGATTTGACCTTCTCGTGTTTCCGTATTGCAATGTTTTGTTCGTGTTGTGCAACTCTGAATCCCAGAGACAGCATAATTTTCAGGAGGTTTAGTAATATAAGTGATGTTAAGAATGCTGTGGTCTGGTCTTTTTCATTTCACTGGAATTCACATTCAGACTGAGTCAAAATAATATATTATAATTACTCTTTTGTTCTTTCAGGGTTGGACAAACCCGTGAAGACTGACTGTAGTGAATATAATAAGGCACTTTTCCTGAAATTTCCACAAAAATATGAAGCAGCTCAACTGTTTTCAACATTGATAATAATCATAAATGTTTCTTGAGCAGCAAATCAGCATATTAGAATGATTTCTGAAGGATCATGTGACACTAGAGTAATGAAGCTGAAAATTCAGCTTTGATCACTGGATACAAATTATATTTTACTAAATATTCACATAGAAAACTGTTGTTTTAAATTGTAATAATATTTCATAATTTTTACTGTATTTTGATCAAATAAATGTAGCCTTGGTGAGCAGAAAAGTTAGGTTTGATCACAGGAATAAATTACATTTTAAAATATATTCACATAGAAAACTGTTGCTTTAAATTGTAATAATATTTCATAATTTTTACTGTATTTTGATCAAATAAACGCAGCCTTGGTGAGCAGAAAATTCAGCTTTGATCACAGGAATAAATTGTATTTTAGTATATATTCACATAGAAAACAGTTGTTTTAAATTTTGAATAATATTTCACAATTTTTACTGTATTTTTACGCAGCTAACTTTTGAACGCTAGCACACGTCTAAATTCCTCAAATTTTTGTATTCATTTTGCATTATTGAAAGATCCTACTTTTCGTTGTTGATAGTTTGATCATATTGTTTCCTCTGAAAATACAGACAATACTATCTGCATGTTGCAGGACAGGGTGTGGTTTGTTTTGAGGTCAGCAAACAAAGATTTTGAGGATACAGGAAACGCCAATAAATCAACAATCCCTGAACTCTCACAACCCACATCAGTCGCCCTCATTCAGTTTTCTATCTCAAGCATTACTACTACTATTCTAAGCAACATGACCCAAGACTTTTTGACCTCACAACCACCCAGAATGCCCTAGTCGAGTGTGGTAGTGAGTGAACACCTCTCACATTTAGTACAGAAAGTCTTAGTTTGTCACCAGAGCGTCATCTTCAGAAGATTTCAATCTACTTAAGATAGTAGAGGACATTATTTTGTATTTAATAGCATTTATTGAAAAGTTAGCATGAATGTGGTGGTTATATTTCTAGCATGCACGTTAATGCAATGGAGAATTCATTTTTCCAATGTTCTTCTTATTGAAATATAATAGTATGAACCTTTTATGCATAAGCTTTAGCATATACCGTCACAATGATAGTGACTAATTTGACCTCTTGACCTGATCAACAATCCAGACTCCAGTATTGATTTATCTGAACATGCTTAGAGACGCTCAAAGGCAAATGTAGGTTGTCATTCAGTTGACTTTGCCATTGCTCTCAAAATATATTAAATCCCATTTTCCATCTAGCTCCCTGTAAGTGTTAACAGCAGAGTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU493910 True 2072 lncRNA 0.35 1 1284690 1286761

Neighbor

gene id symbol gene type direction distance location
CI01000306_01278230_01279369 NA coding upstream 5206 1278230 ~ 1279484 (+)
CI01000306_01224349_01255175 NA coding upstream 29218 1224150 ~ 1255472 (+)
CI01000306_01209847_01210850 ACYP2 coding upstream 73458 1209395 ~ 1211232 (+)
CI01000306_01047698_01080329 TMEM63A, TMEM63B coding upstream 202431 1047698 ~ 1082259 (+)
CI01000306_01008614_01011977 RALB.S, RALBA, RALBB, RALB.L, RALB coding upstream 272713 1008614 ~ 1011977 (+)
CI01000306_01293889_01308316 SPTBN1 coding downstream 6907 1293668 ~ 1308316 (+)
CI01000306_01308428_01312462 SPTBN1 coding downstream 21667 1308428 ~ 1312870 (+)
CI01000306_01315927_01321358 NA coding downstream 28771 1315532 ~ 1322294 (+)
CI01000306_01329678_01378388 EML6, EML5 coding downstream 42917 1329678 ~ 1378510 (+)
CI01000306_01387861_01391135 NA coding downstream 100841 1387602 ~ 1392321 (+)
G430113 NA non-coding upstream 14575 1236345 ~ 1270115 (+)
G430478 NA non-coding upstream 90730 1193748 ~ 1193960 (+)
G430477 NA non-coding upstream 91971 1192517 ~ 1192719 (+)
G430470 NA non-coding upstream 110784 1173686 ~ 1173906 (+)
G430467 NA non-coding upstream 116127 1168012 ~ 1168563 (+)
G430182 NA non-coding downstream 1964 1288725 ~ 1289910 (+)
G430489 NA non-coding downstream 36302 1323063 ~ 1324428 (+)
G430492 NA non-coding downstream 97873 1384634 ~ 1384851 (+)
G430497 NA non-coding downstream 108991 1395752 ~ 1395970 (+)
G430498 NA non-coding downstream 110152 1396913 ~ 1397177 (+)
G430452 NA other upstream 133752 1150597 ~ 1150938 (+)
G430409 NA other upstream 284788 925544 ~ 999902 (+)
CI01000306_00235686_00242814 NA other upstream 1047321 235447 ~ 242861 (+)
G430719 NA other downstream 861621 2148382 ~ 2150954 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 1686395 2973156 ~ 2979157 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 2487383 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 2491291 3778052 ~ 3783019 (+)
CI01000306_03807268_03810946 NA other downstream 2521472 3807268 ~ 3811243 (+)

Expression


Co-expression Network