Gene
RNA
| Item | Value |
|---|---|
| gene id | G430498 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 1396913 ~ 1397177 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU494302 | True | 265 | lncRNA | 0.30 | 1 | 1396913 | 1397177 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_01387861_01391135 | NA | coding | upstream | 4592 | 1387602 ~ 1392321 (+) |
| CI01000306_01329678_01378388 | EML6, EML5 | coding | upstream | 18403 | 1329678 ~ 1378510 (+) |
| CI01000306_01315927_01321358 | NA | coding | upstream | 74619 | 1315532 ~ 1322294 (+) |
| CI01000306_01308428_01312462 | SPTBN1 | coding | upstream | 84043 | 1308428 ~ 1312870 (+) |
| CI01000306_01293889_01308316 | SPTBN1 | coding | upstream | 88597 | 1293668 ~ 1308316 (+) |
| CI01000306_01429843_01430151 | NA | coding | downstream | 31636 | 1427779 ~ 1430275 (+) |
| CI01000306_01481595_01481955 | NA | coding | downstream | 84418 | 1481595 ~ 1482496 (+) |
| CI01000306_01578460_01578838 | NA | coding | downstream | 181283 | 1578460 ~ 1579027 (+) |
| CI01000306_01627469_01632656 | RFC4 | coding | downstream | 230292 | 1627469 ~ 1632729 (+) |
| CI01000306_01639496_01661857 | ANKRD13C.S, ANKRD13C, ANKRD13C.L | coding | downstream | 241888 | 1639065 ~ 1663148 (+) |
| G430497 | NA | non-coding | upstream | 943 | 1395752 ~ 1395970 (+) |
| G430492 | NA | non-coding | upstream | 12062 | 1384634 ~ 1384851 (+) |
| G430489 | NA | non-coding | upstream | 72485 | 1323063 ~ 1324428 (+) |
| G430182 | NA | non-coding | upstream | 107003 | 1288725 ~ 1289910 (+) |
| G430142 | NA | non-coding | upstream | 110152 | 1284690 ~ 1286761 (+) |
| G430499 | NA | non-coding | downstream | 2441 | 1399618 ~ 1399833 (+) |
| G430502 | NA | non-coding | downstream | 9853 | 1407030 ~ 1407249 (+) |
| G430504 | NA | non-coding | downstream | 11153 | 1408330 ~ 1408560 (+) |
| G430509 | NA | non-coding | downstream | 18030 | 1415207 ~ 1415606 (+) |
| CI01000306_01209847_01210850 | ACYP2 | other | upstream | 178356 | 1209395 ~ 1211232 (+) |
| G430452 | NA | other | upstream | 245975 | 1150597 ~ 1150938 (+) |
| G430409 | NA | other | upstream | 397011 | 925544 ~ 999902 (+) |
| CI01000306_00235686_00242814 | NA | other | upstream | 1159544 | 235447 ~ 242861 (+) |
| G430719 | NA | other | downstream | 751205 | 2148382 ~ 2150954 (+) |
| CI01000306_02974291_02976718 | TP53INP2 | other | downstream | 1575979 | 2973156 ~ 2979157 (+) |
| CI01000306_03772689_03777211 | DYNLRB1 | other | downstream | 2376967 | 3772689 ~ 3777550 (+) |
| CI01000306_03778075_03781910 | MAP1LC3A, MAP1LC3A.L | other | downstream | 2380875 | 3778052 ~ 3783019 (+) |
| CI01000306_03807268_03810946 | NA | other | downstream | 2411056 | 3807268 ~ 3811243 (+) |
