Gene
RNA
| Item | Value |
|---|---|
| gene id | G431747 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 1753414 ~ 1754504 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU495747 | True | 1091 | lncRNA | 0.40 | 1 | 1753414 | 1754504 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_01723684_01726043 | MAFGA, MAFGB, MAFG | coding | downstream | 27371 | 1717933 ~ 1726043 (-) |
| CI01000306_01665458_01676209 | NA | coding | downstream | 77191 | 1664797 ~ 1676223 (-) |
| CI01000306_01633237_01635512 | HRASLS | coding | downstream | 116641 | 1633073 ~ 1636773 (-) |
| CI01000306_01580628_01611787 | SOS1 | coding | downstream | 141627 | 1580374 ~ 1611787 (-) |
| CI01000306_01572341_01576690 | NA | coding | downstream | 176724 | 1572341 ~ 1576690 (-) |
| CI01000306_01756353_01763570 | PYCR1B, PYCR1.L, PYCR1, PYCR1A, PYCR2 | coding | upstream | 1671 | 1756175 ~ 1764246 (-) |
| CI01000306_01775235_01776152 | NA | coding | upstream | 20693 | 1775197 ~ 1776432 (-) |
| CI01000306_01792788_01804803 | ASPSCR1 | coding | upstream | 38284 | 1792788 ~ 1804803 (-) |
| CI01000306_01826418_01844251 | MFN1B | coding | upstream | 71593 | 1826097 ~ 1844251 (-) |
| CI01000306_01859514_01870761 | NA | coding | upstream | 104501 | 1859005 ~ 1870822 (-) |
| G431757 | NA | non-coding | downstream | 12794 | 1732745 ~ 1740620 (-) |
| G431746 | NA | non-coding | downstream | 20989 | 1727489 ~ 1732425 (-) |
| G431737 | NA | non-coding | downstream | 47343 | 1705349 ~ 1706071 (-) |
| G431732 | NA | non-coding | downstream | 127397 | 1625345 ~ 1626017 (-) |
| G431764 | NA | non-coding | downstream | 241144 | 1508586 ~ 1512270 (-) |
| G431913 | NA | non-coding | upstream | 31081 | 1785585 ~ 1786256 (-) |
| G431916 | NA | non-coding | upstream | 52341 | 1806845 ~ 1807068 (-) |
| G431918 | NA | non-coding | upstream | 55339 | 1809843 ~ 1810059 (-) |
| G431751 | NA | non-coding | upstream | 102293 | 1856797 ~ 1898332 (-) |
| G431933 | NA | non-coding | upstream | 144361 | 1898865 ~ 1899107 (-) |
| G431814 | NA | other | downstream | 440980 | 1311702 ~ 1312434 (-) |
| G431706 | NA | other | downstream | 590076 | 1163027 ~ 1163338 (-) |
| CI01000306_00482506_00494090 | PFKLB, PFKL | other | downstream | 1269765 | 482482 ~ 494090 (-) |
| G432022 | NA | other | upstream | 1245732 | 3000236 ~ 3003891 (-) |
| CI01000306_04544349_04545034 | NA | other | upstream | 2788219 | 4542723 ~ 4545244 (-) |
| G433450 | NA | other | upstream | 3607139 | 5361643 ~ 5383763 (-) |
| G433670 | NA | other | upstream | 4286510 | 6041014 ~ 6041283 (-) |
| G433985 | NA | other | upstream | 4441603 | 6196107 ~ 6197210 (-) |
