G431913


Basic Information

Item Value
gene id G431913
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 1785585 ~ 1786256 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU495938
TTCTGTTATGGTATTAATTTGAATTAGATTTTTATACTTTCAGTTTTCATTTTATTTTTAGTGTCAGTTTTAGTCATTTTGTGTAAATATAAGTTTTTATCTAAGATTTATTTTATTTCAATTAAAGAAAATTATTTTAAATAGTTTTAGTAAAAAAAAAAAGACATTCACACTGATTACGATTCTGTTTTTGTGTCGGATAAATAAATTATATAATTTGATATTTTCCCGTTAGCTTCAGTATAGTTTGCTCACATACTCACTCACACACTCAAAGTACCCTAGCAACCACCCTGAGTACCTTAGCAACTGCATAGCAACACCCTAGCAACCAGCCTGAGTACCCTAGCAACCACTCAGAATACCCTAGCAACCGCATAACAACACCCAACCACCCTTTGTACCTAAGCAACCGCATAGCAACCACCCATATTACCCTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU495938 True 441 lncRNA 0.33 2 1785585 1786256

Neighbor

gene id symbol gene type direction distance location
CI01000306_01775235_01776152 NA coding downstream 9153 1775197 ~ 1776432 (-)
CI01000306_01756353_01763570 PYCR1B, PYCR1.L, PYCR1, PYCR1A, PYCR2 coding downstream 21339 1756175 ~ 1764246 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG coding downstream 59542 1717933 ~ 1726043 (-)
CI01000306_01665458_01676209 NA coding downstream 109362 1664797 ~ 1676223 (-)
CI01000306_01633237_01635512 HRASLS coding downstream 148812 1633073 ~ 1636773 (-)
CI01000306_01792788_01804803 ASPSCR1 coding upstream 6532 1792788 ~ 1804803 (-)
CI01000306_01826418_01844251 MFN1B coding upstream 39841 1826097 ~ 1844251 (-)
CI01000306_01859514_01870761 NA coding upstream 72749 1859005 ~ 1870822 (-)
CI01000306_01905901_01906725 NA coding upstream 119442 1905698 ~ 1907020 (-)
CI01000306_01927392_02010649 FLNB coding upstream 141077 1927333 ~ 2010774 (-)
G431747 NA non-coding downstream 31081 1753414 ~ 1754504 (-)
G431757 NA non-coding downstream 44965 1732745 ~ 1740620 (-)
G431746 NA non-coding downstream 53160 1727489 ~ 1732425 (-)
G431737 NA non-coding downstream 79514 1705349 ~ 1706071 (-)
G431732 NA non-coding downstream 159568 1625345 ~ 1626017 (-)
G431916 NA non-coding upstream 20589 1806845 ~ 1807068 (-)
G431918 NA non-coding upstream 23587 1809843 ~ 1810059 (-)
G431751 NA non-coding upstream 70541 1856797 ~ 1898332 (-)
G431933 NA non-coding upstream 112609 1898865 ~ 1899107 (-)
G431777 NA non-coding upstream 116392 1902648 ~ 1924550 (-)
G431814 NA other downstream 473151 1311702 ~ 1312434 (-)
G431706 NA other downstream 622247 1163027 ~ 1163338 (-)
CI01000306_00482506_00494090 PFKLB, PFKL other downstream 1301936 482482 ~ 494090 (-)
G432022 NA other upstream 1213980 3000236 ~ 3003891 (-)
CI01000306_04544349_04545034 NA other upstream 2756467 4542723 ~ 4545244 (-)
G433450 NA other upstream 3575387 5361643 ~ 5383763 (-)
G433670 NA other upstream 4254758 6041014 ~ 6041283 (-)
G433985 NA other upstream 4409851 6196107 ~ 6197210 (-)

Expression


Co-expression Network