XLOC_012799 (cfdp1)


Basic Information

Item Value
gene id XLOC_012799
gene name cfdp1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 22416051 ~ 22486767 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025531
ACATGCTGGGCTTTTAGTAAAGCAACCACACGTTTGTTCAAAGCTAGCTGGTTAGCCCCAGTGTTTCTTGCAAGTATTTTTTGGAGTTTTTCTCTGATTTAGCAGCTAATTCTACAGCGCACTGCACGTACGACACAAGAATGAATTATTCAGATTACGACTCGGATGGTTATTCATCAAACGAAGATGAAGACTATGTCCCTTCAGATGATAACTTGAGTGAGGATGACATTAATGATTGTGTAAAGGAGGATGCGCTGGAAGGGGAGGATCACGACCGGCAGACGCCGGAAAatttaacaaagaaaaagaagaaaagtaaAGCAGATGTCCATATGAGaaaaaggaaaaaaggagGCCTCAAACTGGTGGAGGATGGCGAGGCAAGTACAGCAGATCAGCAGAAGGACGAAGATGAGCCAAAGGAAGACGATTTTGTAACCAAGTCAGTAGGAGACATTGAAGAGCGGCAGAAGAAGAAAGCAGATGATCTTTGGGCTAGTTTTCTGAGTGATATCCCTAGACCCAAAGCAGAAGTTCCAAGTGCAAGCTCTCAGAAGTTCACATCCGCAGCTGCTACAGATGAACCCAGTAAACTCTCTACAGCGTCTTCCCAGAAGGAGGACAAACCCAAAGATTCCTCCAAAATCACAATTACTAAGGTGTTCGATTTTGCTGGAGAAGAGGTTCGGGTCACTAAAGAGGTGGATGCCAGATCACGTGAAGCCAAGAGTTTTTTGAAAAACGAAGAGAAGTTGCTGGAGGACACAAAAGAGCCATCCGTGTCCTCTGAACCACAGCCACCCCATCCGCTCTCCTCTGGATCCAGTGCGAAGAGACCAGCAGGCATGGGGAGCATCCTGAATCGCATTGGGGCCAAAAAGCAGAAGATGAGCACTCTGGAGAAGTCGAAGATGGACTGGGATGCCTTTAAATCAGAGGAGGGCATCACAGATGAGCTGGCAATCCATAATCGAGGCAAAGAAGGGTACGTGGAGCGAAAAAACTTCCTCGAGCGAGTGGACCAGCGCCAGTTTGAGCTGGAGAAAACTGTGCGTCTGAACAATATGAAACGGTGACAAGAGGAGAGAGCAGATACACTCACTGATCAAAACACAGACTGTCACAGAATCACACTGCATACACTCATGCTTTTCAGTATTTTTTCTTAGCTCCTTAGTCCTCTGAAATCTGTCTGAATTCATATTCAcatgtacattttgtttataGACTAGCTTCTTTTTTCGGATTCTACTCTTCCTTTGTCTAAAATTGCATCTCCACATCTATCATGACTTCTTTAATAGCAAAGTCGGCTCAAGGTGTGTGTGTTCTTCAACAAATGTCTCCAAAACATTTTAGAATCCACTGAAATACATCTTATAGTTGacatttaaagtgatagttcacctaaaattgcTTATTCTGTTAACGTTTACTCATCATTCATTCTTCCAATCTCACCTtgcttctgttgagcacaaaggaagacatactgaagaatgttggggaaaaaacagccattgacctccattgtgTTGTTGTTCCTACTATGAATGGCAATGGCATGTTTGACATTCTTTTCATTCTTTAGAATATTttgtttggtgttcaacagaagaaagatattTATAATAGTATGGAGCCATTTGAGTGTAAGTAAATTAGGAAATGTTTGTTGTTGGATAAATGATCCCTTTAAGGGAATGAAGACATCAAGatctaaataaaaatgttcttg

Function

symbol description
cfdp1 Acts upstream of or within bone mineralization and cranial skeletal system development. Predicted to be located in kinetochore. Is expressed in brain; fin bud; head; otic vesicle; and yolk syncytial layer. Orthologous to human CFDP1 (craniofacial development protein 1).

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0030282 bone mineralization biological_process
GO:1904888 cranial skeletal system development biological_process
GO:0000776 kinetochore cellular_component
GO:0000777 condensed chromosome kinetochore cellular_component
GO:0005694 chromosome cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5736 Acts upstream of or within bone mineralization and cranial skeletal system development. Predicted to be located in kinetochore. Is expressed in brain; fin bud; head; otic vesicle; and yolk syncytial layer. Orthologous to human CFDP1 (craniofacial development protein 1).

Ensembl:

ensembl_id ENSDARG00000095086

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025531 True 1741 mRNA 0.42 7 22416051 22486767
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_012798 carmil2 coding upstream 19680 22302635 ~ 22396371 (+)
XLOC_012797 ctcf coding upstream 120987 22285992 ~ 22295064 (+)
XLOC_012796 ripor1 coding upstream 132653 22138924 ~ 22283398 (+)
XLOC_012795 si:ch73-186j5.2 coding upstream 288066 22123072 ~ 22127985 (+)
XLOC_012794 zgc:158868 coding upstream 299673 22109379 ~ 22116378 (+)
XLOC_012800 bcar1 coding downstream 17433 22504200 ~ 22688073 (+)
XLOC_012801 gnao1a coding downstream 306698 22793465 ~ 22975655 (+)
XLOC_012802 cbfb coding downstream 507346 22994113 ~ 23072665 (+)
XLOC_012803 mef2aa coding downstream 700652 23187419 ~ 23356077 (+)
XLOC_012804 mctp2a coding downstream 886916 23373683 ~ 23456101 (+)
XLOC_012793 NA non-coding upstream 315823 22099619 ~ 22100228 (+)
XLOC_012792 CT573204.1 non-coding upstream 334298 22078144 ~ 22081753 (+)
XLOC_012790 NA non-coding upstream 942687 21469636 ~ 21473364 (+)
XLOC_012787 BX571884.1 non-coding upstream 1224267 21191665 ~ 21191784 (+)
XLOC_012786 NA non-coding upstream 1246303 21163424 ~ 21169748 (+)
XLOC_012805 NA non-coding downstream 972162 23458929 ~ 23463541 (+)
XLOC_012806 AL805905.1 non-coding downstream 985379 23472146 ~ 23472260 (+)
XLOC_012807 NA non-coding downstream 1324617 23811384 ~ 23828058 (+)
XLOC_012808 NA non-coding downstream 1389673 23876440 ~ 23889042 (+)
XLOC_012809 CR847971.1 non-coding downstream 1990759 24477526 ~ 24483285 (+)

Expression

Expression of XLOC_012799(cfdp1) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Expression of XLOC_012799(cfdp1) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_02834348_02858912 CFDP1 coding CI01000013 null 2834254 ~ 2858912 (-)