G430834


Basic Information

Item Value
gene id G430834
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 2482106 ~ 2483041 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU494675
ATTTGGCATTTGAAGCATTTTAATTGGAAGTTTGTGGGTTTTTTCTTTCTTTTCTTTTTTTGGGGGGGAGCACTGTGCAAATTTGTTACCTGTAAATATTGAAGCTACACACATATGTAAACTGATAAAATCCAAGACAGTGCCAAAAAGAGACATAACAATCAAAAGGCATCAACAATAAGGATATTTTCTACAAAACAAAGCAGGTTCAATAAATACCATATTTACAGAACACTAAAAAACAAACAAATGCATGCAAGTTGATTTTTATTGTGGCGTCTGAAGCGAAAGTAGTCCATAGTTGTTCTTTTTTGATTTTTTTTTTTTTTTTCACAAGTGTGATTCAGTAAATTCCTACAACCTAAAAGAGTCAATCTATTTTAGGCGTTTCAGGAGCTGCATCATCTAGCAAAAAGCCCTTAGGACTCAGAGGTCAAATCCTATTTTTCTGTTCATCAAACAATTCATTCAAGGATTAAGAGTGCTTTAGAGTTTATATTCATACTTTTTGTGACGACAGACCTCCACAGGCAGTATTGCATGAAGTACAAGTTAGAACATGATTCTTTTTCTGTCCCTTTTACTCTGCAAAAGCACTGACCGTTGCATCGTTAAATAAAAACTGATTAACTCAAGTCTCTTTGATTCATTGTCAGACAGGTATTATACAAAATGTATGTCTTTGTATATATGACCCTTCAACTTTATAGTTAATATTAAATTACTGAATTATGGTCATGGCTTTTAACCGAGAGTTCCACAGAGTTCTTCCTGGTTTTCTTCCTGTCACTGAGTTTGGGTACACGTCTTTGAAGATGAAGTCTTGGACCAAAGATAATAAGTCCCACCAATAGACCAGCTAATGGCATCAGCTTCATTGACTCAAACATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU494675 True 892 lncRNA 0.34 2 2482106 2483041

Neighbor

gene id symbol gene type direction distance location
CI01000306_02398383_02404841 NFS1 coding upstream 77203 2397867 ~ 2404903 (+)
CI01000306_02389329_02392416 RBM39, RBM39A, RBM39B coding upstream 89146 2389329 ~ 2392960 (+)
CI01000306_02369579_02380912 REM1, GEM coding upstream 100784 2369579 ~ 2381322 (+)
CI01000306_02359989_02366944 NA coding upstream 115109 2359989 ~ 2366997 (+)
CI01000306_02354432_02358965 PNP4A coding upstream 122605 2353181 ~ 2359501 (+)
CI01000306_02552479_02576156 NA coding downstream 69059 2552100 ~ 2576536 (+)
CI01000306_02591160_02596388 SYT6 coding downstream 108119 2591160 ~ 2597618 (+)
CI01000306_02614704_02617766 NA coding downstream 131491 2614532 ~ 2618085 (+)
CI01000306_02626856_02627986 NA coding downstream 143552 2626593 ~ 2628184 (+)
CI01000306_02643806_02653170 NA coding downstream 160765 2643806 ~ 2653422 (+)
G430811 NA non-coding upstream 95548 2386284 ~ 2386558 (+)
G430805 NA non-coding upstream 129167 2352711 ~ 2352939 (+)
G430745 NA non-coding upstream 196820 2270777 ~ 2285286 (+)
G430739 NA non-coding upstream 289725 2159462 ~ 2192381 (+)
CI01000306_02112910_02114040 ARF4B non-coding upstream 368004 2112815 ~ 2114420 (+)
G430931 NA non-coding downstream 400850 2883891 ~ 3238771 (+)
G430690 NA non-coding downstream 553027 3036068 ~ 3054700 (+)
G430951 NA non-coding downstream 566856 3049897 ~ 3050294 (+)
CI01000306_03048314_03055936 NA non-coding downstream 569971 3048314 ~ 3056098 (+)
G430716 NA non-coding downstream 615603 3098644 ~ 3099359 (+)
G430719 NA other upstream 331152 2148382 ~ 2150954 (+)
CI01000306_01209847_01210850 ACYP2 other upstream 1263549 1209395 ~ 1211232 (+)
G430452 NA other upstream 1331168 1150597 ~ 1150938 (+)
G430409 NA other upstream 1482204 925544 ~ 999902 (+)
CI01000306_00235686_00242814 NA other upstream 2244737 235447 ~ 242861 (+)
CI01000306_02974291_02976718 TP53INP2 other downstream 490115 2973156 ~ 2979157 (+)
CI01000306_03772689_03777211 DYNLRB1 other downstream 1291103 3772689 ~ 3777550 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other downstream 1295011 3778052 ~ 3783019 (+)
CI01000306_03807268_03810946 NA other downstream 1325192 3807268 ~ 3811243 (+)
G432583 NA other downstream 1843361 4326402 ~ 4327822 (+)

Expression


Co-expression Network