G432032


Basic Information

Item Value
gene id G432032
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 2876373 ~ 2881733 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU496096
CGGTTGAGGCCGATGTCATGGTAGGTGAGAATGACAGGGCGGTTGCCTTTAGGGGTGCCTCTCATGGTCACATGGAGCACACCGTAGGGCGTCTCAATGTCATGCTCCTGGAACAAACACTGCATTTCCAGTGCATGCATTCTGCTCCACATCCAGAACGGTTGACATGTTTCCACACACGAGACAGTGACAGCTTCAGAGAGGAGACAGGAAGAGATGGGAGGATCCACGAGAGAAACACAGAGTAGCTGAAGGAGGGATGGAGGGAAACGGACAGGGAGAACAGTAGCTAGGCAGAGATCCAAGAGGGAGGGGTGACAGAAGAGGAGAGAGAGGGAGAGTGAGATAAACCAACAGAGGAGGTATGTTTTGAGAGAGAGGGAGAGATGTTGAGATGCGGATAGAGTGAGGAGGAGAAAGAAGTGACTGCGGTTTGCGCTGAAGAGGCAGTGCTTGCTCATGTATACGGCAACACTGAAAGAGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU496096 True 485 lncRNA 0.52 2 2876373 2881733

Neighbor

gene id symbol gene type direction distance location
CI01000306_02601172_02604783 OLFML3B, OLFML3 coding downstream 271590 2601000 ~ 2604783 (-)
CI01000306_02485219_02510419 PLEKHG5A coding downstream 365954 2485131 ~ 2510419 (-)
CI01000306_02455495_02470846 NA coding downstream 405527 2454988 ~ 2470846 (-)
CI01000306_02443217_02444650 NA coding downstream 431280 2443001 ~ 2445093 (-)
CI01000306_02407441_02437462 DVL1B, DVL1 coding downstream 438214 2407421 ~ 2438159 (-)
CI01000306_02919027_02938762 MYH7B, MYH7BA, MYH7BB coding upstream 37155 2918888 ~ 2938762 (-)
CI01000306_02966994_02968675 SNAI1A coding upstream 84204 2965937 ~ 2969186 (-)
CI01000306_03006241_03009198 NA coding upstream 124457 3006190 ~ 3009356 (-)
CI01000306_03044394_03045362 NA coding upstream 161643 3043376 ~ 3046205 (-)
CI01000306_03070842_03073585 GATA1A coding upstream 188845 3070578 ~ 3073634 (-)
G432196 NA non-coding downstream 117614 2758459 ~ 2758759 (-)
G432173 NA non-coding downstream 132522 2743133 ~ 2743851 (-)
G432153 NA non-coding downstream 134100 2740941 ~ 2742273 (-)
G432154 NA non-coding downstream 177636 2697440 ~ 2698737 (-)
G432161 NA non-coding downstream 184415 2688458 ~ 2691958 (-)
G432051 NA non-coding upstream 70516 2952249 ~ 2956344 (-)
G432280 NA non-coding upstream 241744 3123477 ~ 3125954 (-)
G432285 NA non-coding upstream 255552 3137285 ~ 3137732 (-)
G432282 NA non-coding upstream 257058 3138791 ~ 3139881 (-)
G432281 NA non-coding upstream 267207 3148940 ~ 3152959 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 1127423 1717933 ~ 1726043 (-)
G431814 NA other downstream 1563939 1311702 ~ 1312434 (-)
G431706 NA other downstream 1713035 1163027 ~ 1163338 (-)
CI01000306_00482506_00494090 PFKLB, PFKL other downstream 2392724 482482 ~ 494090 (-)
G432022 NA other upstream 118503 3000236 ~ 3003891 (-)
CI01000306_04544349_04545034 NA other upstream 1660990 4542723 ~ 4545244 (-)
G433450 NA other upstream 2479910 5361643 ~ 5383763 (-)
G433670 NA other upstream 3159281 6041014 ~ 6041283 (-)
G433985 NA other upstream 3314374 6196107 ~ 6197210 (-)

Expression


Co-expression Network