G432051


Basic Information

Item Value
gene id G432051
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 2952249 ~ 2956344 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU496119
AACGAATGTGCGAAGATTAAGCCAAACGCCCTTTACAAAAAAGGTAAAACAATGATATCGGACGATTTTGAAGTTGGAGGAGAAAATTAGATTAAATTTTTTGCCCTGCCGTGGTGTTTCTGCCTACGTCACGGGTGAACTTTCAACGTAATGCGTGGTGCATCGCAGAGCTAGTGGTAAGACAAGAGGTTAAAAAGGTTAAAAAGTATTTACATTTTTATTTTTTAAATGACAGTACGTTTCGCTAGATAAGACCCTTATTCCTCGTCTGGGATCATGTAGAGCTCTTTGAAGCTGCACTGAAACTGACATTTGGACCTTCAACCCAATAAACCCCGACTGAAGTCCACTATATGGAGAAAAATCCGGGAATGTTTTCCTCAAAAACCTTTACTTCTTTTCGACTGAAGAAAGAAAGACATGAATATCTTGGATGACAAGGGGAAGAAAGAAACTCATACAGGTTCAGAACAACCTGAGGAGTCAGAGAGAGGAAATGCAGAAAAGAGGGATGATGAGTACAAGAGAACATCAGAGGGTTGAGGGAGGAAATCCCACAGCAACCTGACCTCCATTTGAGCCAACATTACACATGAGTTCACCTACTGTCTCTCTTTCCCTTTCTCTCTCTCTCTCTCTCTGGGTGTGGTATGTACATCAAAAGCTCCATGTCTCTATAGACTATTCCCATTTAGGACATTTTGGCAAAAACAAGCAAGGTGGCACCGGCCACTAAAACACAGACAATTTTTGAAACGAACATCTAAACAAAGCACACAATTATATGTCTCCCATATAAACACGCACAAAACCGAGCAAGTGCATTCCCACAGTCTCGCGAAGCAGCAGAGATAGAGGTTTCTTAAAGTGCTGCATTCCTCTGCACTCATCCACAGTAGAGGAAACAGAGCCCTCTCTATCATCTCCTCATTCAGAAAGCTCATGGTCTGCATGTGATTTCAATATGGACACAGTCAACTGAGGGTCTGTTCACATTCATGCTAATGTGAGAGCGGCTGTTGAAACGTTTCAGCGGGAAATTAAACAAATCTTTTGGAATTTTTGTGAAGTTCTTAAATTTGTATCAGAGAGATCAACAAGACAAACAAAATAAATGTGTTATTTTGGTAAAGGAAAACACATGCACAGATTTGTTTTGGATAAAAGAAAACATTATTTAAAAAATAAATGGGTTAATAAAAATAAATGAATAAATGAATAAATAAAATGAACGTGAATACAAAAAAATAAATATTTAATTGTCTTGTTTTAAGATTTCTTAGTCTTTTTCCTGGAGGACATGGCAAAAATTATATATATTTTTAATATGCTATATTGGTAGAGAAACACCCTCATGTTTGTCTTGGGTATTTTATGGTTAAAACAATGGGAAAAAATAACAGTGGGGTAAGAATAATATAATATAATATAATATAATATAATATAATAACAGTGGGGTACAAAAAACTAATAATAAAAATATTAATGAAAAATAAACAAAATTTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU496119 True 1507 lncRNA 0.36 4 2952249 2956344

Neighbor

gene id symbol gene type direction distance location
CI01000306_02919027_02938762 MYH7B, MYH7BA, MYH7BB coding downstream 13487 2918888 ~ 2938762 (-)
CI01000306_02601172_02604783 OLFML3B, OLFML3 coding downstream 347466 2601000 ~ 2604783 (-)
CI01000306_02485219_02510419 PLEKHG5A coding downstream 441830 2485131 ~ 2510419 (-)
CI01000306_02455495_02470846 NA coding downstream 481403 2454988 ~ 2470846 (-)
CI01000306_02443217_02444650 NA coding downstream 507156 2443001 ~ 2445093 (-)
CI01000306_02966994_02968675 SNAI1A coding upstream 9593 2965937 ~ 2969186 (-)
CI01000306_03006241_03009198 NA coding upstream 49846 3006190 ~ 3009356 (-)
CI01000306_03044394_03045362 NA coding upstream 87032 3043376 ~ 3046205 (-)
CI01000306_03070842_03073585 GATA1A coding upstream 114234 3070578 ~ 3073634 (-)
CI01000306_03086600_03106758 HCFC1B, HCFC1A, HCFC1 coding upstream 130166 3086510 ~ 3108215 (-)
G432032 NA non-coding downstream 70516 2876373 ~ 2881733 (-)
G432196 NA non-coding downstream 193490 2758459 ~ 2758759 (-)
G432173 NA non-coding downstream 208398 2743133 ~ 2743851 (-)
G432153 NA non-coding downstream 209976 2740941 ~ 2742273 (-)
G432154 NA non-coding downstream 253512 2697440 ~ 2698737 (-)
G432280 NA non-coding upstream 167133 3123477 ~ 3125954 (-)
G432285 NA non-coding upstream 180941 3137285 ~ 3137732 (-)
G432282 NA non-coding upstream 182447 3138791 ~ 3139881 (-)
G432281 NA non-coding upstream 192596 3148940 ~ 3152959 (-)
G432308 NA non-coding upstream 275167 3231511 ~ 3277198 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 1203299 1717933 ~ 1726043 (-)
G431814 NA other downstream 1639815 1311702 ~ 1312434 (-)
G431706 NA other downstream 1788911 1163027 ~ 1163338 (-)
CI01000306_00482506_00494090 PFKLB, PFKL other downstream 2468600 482482 ~ 494090 (-)
G432022 NA other upstream 43892 3000236 ~ 3003891 (-)
CI01000306_04544349_04545034 NA other upstream 1586379 4542723 ~ 4545244 (-)
G433450 NA other upstream 2405299 5361643 ~ 5383763 (-)
G433670 NA other upstream 3084670 6041014 ~ 6041283 (-)
G433985 NA other upstream 3239763 6196107 ~ 6197210 (-)

Expression


Co-expression Network