G432308


Basic Information

Item Value
gene id G432308
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3231511 ~ 3277198 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU496421
TTAGATATAATGAATTTAAAGACTACACTAAACAGATGTTTCTGCTCATTTTTTGTTAAATAATGCAATCACACTTTGGTGTAAGTCCAAGTTTATTAATTCATTAATATACATGGTGCCAGAATGAATACCTCTTTTGTGACAGTAAAGAGGTGATATTTTTTTTACATAATTGTATGTATTTTCCCCATGTTTCAATTACAAAACAACTGTAATATGTTACTTGTCATTTTTACTTCTATAAAATATTTAACTTTTTATAGACATTTTTTCAGATGTCTCCAATCTTTGTCATTCATTAGCAAAATAGATTTTACATTTAACATTTTAGACTCATAATGATGGTCTAAAAAAATCTATATTGTTTTAAGTTGGAATGCATGATAATTATGTAAAATACAAACAGCTACATGAGATTTTGCTGCAAGATTCAGATTAAAAGGTGCCTCACTCGAACATCTAGAGTGAACAAACAGGTAGCTTGATTTAAAAGTTTTAAAAAATGAAAATTATGTATTAAAAACTCTGCAATCCAGTACATGTAATCTAAATCAGTTAAAATGTATAATCATTTTCTAATATGGGAAATAGTAATAAATCCTAGTAAAGTCATTTTGCTATGTAAGACATACATATAGCATTGCTGTTGTTGAAACTTCTATGGCTTGTTCTTGTCTGAGGTTTCTTGGTCTCCCTGTGTGTTGGTCATTCTCAAACGCTGGCTCAGCTCCTGAGTCAAAACTGTGCAGCAGGATTTCTGTATGGTTGAGAACAGGTTTATTTTTTTTATAATGATCAAAAACACTTATCAAAATGTGCTAATGTACAGTTAAAATCTGTGCTGAAGTTTAACAACAATGAAAACAAGACAACTTTAAATGAGCTTCCTGGTGTGGAAGATTATTCAGATGTTAGTGTGTGTTTGTGTGTGTTTGTGTGTGTTTATATTGGCACTACTTGCCTTCTGCTCCCCTGCAGTGCTGCGAGACTTTGAGGTGAGTTCAAACAAGGAGAGCAGCACTCCAATCCCAAGGCCTATAGCCAGAACCAGGAATATGCCCTTCATGCTATGAGCCCTCAGAGACAATGCTTTGGCACTGTCCGGTATACAGCTGCTGGCCCACCACTTAGTGCGCAGATACGCCAGCTCCCCAGCCTCGCTCAGCTGCAGGATGGCCACGCTCAGGTTCTTCAGCATAGGAGATCCTGTTCCAAGAAAAAGACTGAGGCATCAAACCATTCACTGCAGCAAGAAACATCAAGATGTCTTTTGCCTCTCTTTAAAGAAAGTATACACCTTTAAAGTGCACTTATTATGCTTTTTCAGATATTACCTTTCGTGTATGTCATATAGCTGTTTGTGAATGTAAAAGGTCTAGAAAATGTTTTAAAGATCAAAGTGCAGCATAAATGAAGTTATTGTCTTACTGCCTGAAACGAGTTGTCAGCAATTCCAATGTTACTTCCTGCATGAACCTACATAGGTTTGTAACAAATATGTATAATTCCAGCTTAAAGTCTTCATTGTCTGCCTTGAACAACACCTACTTTGACCCTCAAATGTTTGGTTCATGTTTTCAACATGTCGAGAAGACGCTCTTTGAAATTATATCCACTTTGCATGTACTTTCAGAGGATGAGAACTCTTTCAGACACTGTGAGGAAAGAGGTGATGCTGATATATATTGTGTGAAAATGTGTTTTTTGACCTTGGATGTAAACCTATTATAGGAGCCCTCAAAAGCAAACCTTCAGAATAACATAATAGGGACACTTTAAAGGGATAGTTCACCCAAAAATGAAAATTTGATGTCTATGTGCATGCTATGGAGAGCGTGGGCCATGGCATACACGGCATCAATCACAAACTGCACTTTCCCTTCCTGCTCGTATGCCGAATCCCGGCTGATTCGTTCTTCTCCTGAAAGACCAAAAGCAACATGACAGGAATTGAAAAGCTTTGCTAGAGGAATAATCCATTTAGATGTGCTTTGCACATCTTAAAAGCATAAGAATGTATGATAATTCAAGTACTACTGCATTTATGGGAGTAATTTGTTGGAAATGATTTCCTCGCCTGTGCATTTCCTCAGCCCGCTCTCTCCTCTGATTCCAGGCCGTGTCAGTTTGCATTTGAAGTCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU496421 True 2142 lncRNA 0.37 2 3231511 3277198

Neighbor

gene id symbol gene type direction distance location
CI01000306_03086600_03106758 HCFC1B, HCFC1A, HCFC1 coding downstream 123296 3086510 ~ 3108215 (-)
CI01000306_03070842_03073585 GATA1A coding downstream 157877 3070578 ~ 3073634 (-)
CI01000306_03044394_03045362 NA coding downstream 185306 3043376 ~ 3046205 (-)
CI01000306_03006241_03009198 NA coding downstream 222155 3006190 ~ 3009356 (-)
CI01000306_02966994_02968675 SNAI1A coding downstream 262325 2965937 ~ 2969186 (-)
CI01000306_03278833_03292888 PLCH2B coding upstream 1635 3278833 ~ 3292888 (-)
CI01000306_03296768_03330783 SKIA, SKIB, SKI coding upstream 18525 3295723 ~ 3330783 (-)
CI01000306_03334185_03336292 NA coding upstream 56634 3333832 ~ 3336292 (-)
CI01000306_03357647_03435533 KAZN, KAZNB coding upstream 80449 3357647 ~ 3435533 (-)
CI01000306_03477332_03500721 NA coding upstream 200062 3477260 ~ 3500897 (-)
G432281 NA non-coding downstream 78552 3148940 ~ 3152959 (-)
G432282 NA non-coding downstream 91630 3138791 ~ 3139881 (-)
G432285 NA non-coding downstream 93779 3137285 ~ 3137732 (-)
G432280 NA non-coding downstream 105557 3123477 ~ 3125954 (-)
G432051 NA non-coding downstream 275167 2952249 ~ 2956344 (-)
G432370 NA non-coding upstream 7301 3284499 ~ 3284782 (-)
G432406 NA non-coding upstream 261304 3538502 ~ 3538723 (-)
G432411 NA non-coding upstream 395750 3672948 ~ 3673510 (-)
G432415 NA non-coding upstream 403621 3680819 ~ 3681256 (-)
G432022 NA other downstream 227620 3000236 ~ 3003891 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 1482561 1717933 ~ 1726043 (-)
G431814 NA other downstream 1919077 1311702 ~ 1312434 (-)
G431706 NA other downstream 2068173 1163027 ~ 1163338 (-)
CI01000306_00482506_00494090 PFKLB, PFKL other downstream 2747862 482482 ~ 494090 (-)
CI01000306_04544349_04545034 NA other upstream 1265525 4542723 ~ 4545244 (-)
G433450 NA other upstream 2084445 5361643 ~ 5383763 (-)
G433670 NA other upstream 2763816 6041014 ~ 6041283 (-)
G433985 NA other upstream 2918909 6196107 ~ 6197210 (-)
G434016 NA other upstream 3077982 6355180 ~ 6361643 (-)

Expression


Co-expression Network