XLOC_012804 (mctp2a)


Basic Information

Item Value
gene id XLOC_012804
gene name mctp2a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 23373683 ~ 23456101 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025557
TTTGTCGTGAATTCATCTGAAGTGCAGTTTCATCCACAATCACAATGGACCCAAGGAAGAAAATGTGGTCCAATCTCCGGGAGAGAGCAAAGCCTGTGCTAAATCTGAAGAttggaaagaagaagaagaaaacccCTCTGAAATACCGGAGGAGCATGTCAGTACCAGACCTCAGGTTTAACCCCCGCGCCATGATGGCTTTACAGGATGAGTCCAGCACACCGAGTCAAGCCTCTGCCTTCTTTGATAACACAGACGGTTTAGGTGACATAGATGATACAGCTAGTGAAACCTCCAGTGTAGCATTTTCGGAGCGTTTCAGTGTAGCTGACGTCCCATACGTCTGCAGCCCAGCACCATCAGAAAGATCAGCTCCCGTCGACTTCCCAGTTTCAGCGGAAACCGATAAACGTCAAAGAGCCACTACATGGTACTTCGAGGATTCGGATTCGGTGACTGGAGTCACACCTTCATCTGCAGAACTACAGATGACAGCTGGTCATGCTGAGAGGAGGCCAACAGAGTCTTCAGATAAACTGGTGGCGGCCCTCGGCAGAGCTCGTGCTTTAGATGACATGTCTATTTCATCTGAGGAGAAAGCTTGGCATACTGAACATGAGCCATCCTCTCCTTTGTCTATGTTTGTTGTAGGATCAGCTGAGTATCTGGACACTCCTAATGAAACCAGTGACTTTGATGATCTGTCAGAACATGAACGAAATATCTCAGGAGGGTTAACAGAGAGTCAAAGTGCTGCAGGTCTACAGAAGCTCCAGTATCTTCTCACCATCAATCTAAAGGAAGGCAGAAACCTGGTTGTCAGAGACCGTTCAGgtACAAGTGACCCATTCGTCAAATTCAAGTTAGATGGCAAGCACATCTACAAGAGCAAAGTTGTGAACAAGAACTTGAATCCCACATGGAATGAATCATTTTCCTTGCCTGTCAGAGATCTCGATCAGACTCTTCATCTCAAGGTGTATGATCGTGACCTAAGATCCAATGACTTCATGGGATCAAGCAGCTTTCCTCTCAGTAAACTGGAGCTGGACAGGATGGTTCTGATGACGCTGTCTCTGGAAGACCCCAACAGTGAGGAAAGCGATATGGGAGTGATCATTATAGAGGCCTGTCTGTCCATCCGAGAGGAACCGGCCAAACGAAATaaGTGGCTCCTAAGAAGAAAGGGATCCTTCAATAAGGGTCAACCGATAAGCCAGGCGCAGTTTGGGCGGTTCACAAAGAGTCAGGTTTGGTCAGGCGTTTACACTGTTATCTTGGTGGAAGGACAGGACATGCCAGACTGTGGACAAGGAGACGTTTACGTCCGCTTTAGACTTGGAGACCAGCGGGTCAGGAGCAAGAGTCTGTGTATTAAGGCAAACCCGCAGTGGAGGGAGTCCTTCGACTTTAACCAGTTCCAGGATGCGCAGGAAAATCTGGTGGTGGAAGTTTGCTGCAAGAGGGGCAGGAAGTCAGAGGAGTGCTGGGGAGTACTAGATATTGACCTGAGCAGACTTCCTGTCAATCAGAGACAGTTATATACTTATGAGCTGGACCCACAGAAGGGAAAACTGCGGTTTTTGGTCACCCTGACCCCATGTTCAGGTGCGTCCATCTCAGACATCCAGTCTGCTCCACTGGATAACCCTAACACCTTCGAGAAGATGCGTGAGCAATATAGACCGATGAACATTCTTGGAGACTTTAAAAATGTCGGCTTTCTTCAAGTCAAGTTAATAAGAGCCACAGATCTTCCATCAACAGATATAAGTGGTAAAAGTGACCCTTTTTGTACCCTTGAGCTGGGTAACAGCAAACTGCAAACTCACACCATATGTAAAACACTGAATCCTGAATGGAGAACAGCCCTGACTTTCCCCATTAGGGACATCCATGACGTTTTGGTGCTCACAGTCTATCATGAAGATGGAGATAAAGCTCCAGACTTCCTGGGAAAAGTTGCCATTCCTTTGTTGACTatCAAAGCAGGAATCAAAACCTTCCAGCCAAAAGAAACCATGTTTGCGGAGGACAATCCCAAGTTTAACAAAAAGCTTTTAGCACGTAATATCTATCGAGTGAGGAAGATCAGCATGGCCATTCTCTATACGCTGCAGTATATTAAAAGCTGCTTCCACTGGGAGAACACGCAGAGGAGTATTACAGCCTTCCTGATATTTGTGGTGGCAGTGTGGCTTTGGGAGCTGTTCATGCTGCCTCTCTTTCTCCTCCTGCTCATTGGCTGGAACTACTTCCACATCACACCAGGCATGGCCAGCTACAGTCAGGACTTGGAGCACATGTCGGTGGCTGAGGACGAGGACGAGGATGAAAAGGAATCAGAGAAAAGAGGACTGATGGAAAAAATCCACATGGTTCAAGAAATTGTGCTTACAGTTCAGAGCACTTTAGATGAAGTGGCTTGCATTGGGGAAAGAGTGAAAAATACATTCAACTGGTCAGTCCCGTTCTTGTCATTGTTGGCCTGCCTGGTGCTGCTTGTGGCGACTGTCGGCTTGTACTACATCCCGCTGCGCTACATAGTTTTACTGTGGGGTGTTAACAAATTTACCAAGAAGCTTTTCAACCCATATGCCATTGACAATAATGAAATGCTGGATTTCCTCAAGAGGGTGCCTTCTGATGTTCAAAAGGTGCAGTACAGCGAGCTGAGAGCCGAGCTTGGCAACCAGGGCCCGGTGAAGAAGAAACGCGGGCGCTGA
>TCONS_00025556
TTTGTCGTGAATTCATCTGAAGTGCAGTTTCATCCACAATCACAATGGACCCAAGGAAGAAAATGTGGTCCAATCTCCGGGAGAGAGCAAAGCCTGTGCTAAATCTGAAGAttggaaagaagaagaagaaaacccCTCTGAAATACCGGAGGAGCATGTCAGTACCAGACCTCAGGTTTAACCCCCGCGCCATGATGGCTTTACAGGATGAGTCCAGCACACCGAGTCAAGCCTCTGCCTTCTTTGATAACACAGACGGTTTAGGTGACATAGATGATACAGCTAGTGAAACCTCCAGTGTAGCATTTTCGGAGCGTTTCAGTGTAGCTGACGTCCCATACGTCTGCAGCCCAGCACCATCAGAAAGATCAGCTCCCGTCGACTTCCCAGTTTCAGCGGAAACCGATAAACGTCAAAGAGCCACTACATGGTACTTCGAGGATTCGGATTCGGTGACTGGAGTCACACCTTCATCTGCAGAACTACAGATGACAGCTGGTCATGCTGAGAGGAGGCCAACAGAGTCTTCAGATAAACTGGTGGCGGCCCTCGGCAGAGCTCGTGCTTTAGATGACATGTCTATTTCATCTGAGGAGAAAGCTTGGCATACTGAACATGAGCCATCCTCTCCTTTGTCTATGTTTGTTGTAGGATCAGCTGAGTATCTGGACACTCCTAATGAAACCAGTGACTTTGATGATCTGTCAGAACATGAACGAAATATCTCAGGAGGGTTAACAGAGAGTCAAAGTGCTGCAGGTCTACAGAAGCTCCAGTATCTTCTCACCATCAATCTAAAGGAAGGCAGAAACCTGGTTGTCAGAGACCGTTCAGgtACAAGTGACCCATTCGTCAAATTCAAGTTAGATGGCAAGCACATCTACAAGAGCAAAGTTGTGAACAAGAACTTGAATCCCACATGGAATGAATCATTTTCCTTGCCTGTCAGAGATCTCGATCAGACTCTTCATCTCAAGGTGTATGATCGTGACCTAAGATCCAATGACTTCATGGGATCAAGCAGCTTTCCTCTCAGTAAACTGGAGCTGGACAGGATGGTTCTGATGACGCTGTCTCTGGAAGACCCCAACAGTGAGGAAAGCGATATGGGAGTGATCATTATAGAGGCCTGTCTGTCCATCCGAGAGGAACCGGCCAAACGAAATaaGTGGCTCCTAAGAAGAAAGGGATCCTTCAATAAGGGTCAACCGATAAGCCAGGCGCAGTTTGGGCGGTTCACAAAGAGTCAGGTTTGGTCAGGCGTTTACACTGTTATCTTGGTGGAAGGACAGGACATGCCAGACTGTGGACAAGGAGACGTTTACGTCCGCTTTAGACTTGGAGACCAGCGGGTCAGGAGCAAGAGTCTGTGTATTAAGGCAAACCCGCAGTGGAGGGAGTCCTTCGACTTTAACCAGTTCCAGGATGCGCAGGAAAATCTGGTGGTGGAAGTTTGCTGCAAGAGGGGCAGGAAGTCAGAGGAGTGCTGGGGAGTACTAGATATTGACCTGAGCAGACTTCCTGTCAATCAGAGACAGTTATATACTTATGAGCTGGACCCACAGAAGGGAAAACTGCGGTTTTTGGTCACCCTGACCCCATGTTCAGGTGCGTCCATCTCAGACATCCAGTCTGCTCCACTGGATAACCCTAACACCTTCGAGAAGATGCGTGAGCAATATAGACCGATGAACATTCTTGGAGACTTTAAAAATGTCGGCTTTCTTCAAGTCAAGTTAATAAGAGCCACAGATCTTCCATCAACAGATATAAGTGGTAAAAGTGACCCTTTTTGTACCCTTGAGCTGGGTAACAGCAAACTGCAAACTCACACCATATGTAAAACACTGAATCCTGAATGGAGAACAGCCCTGACTTTCCCCATTAGGGACATCCATGACGTTTTGGTGCTCACAGTCTATCATGAAGATGGAGATAAAGCTCCAGACTTCCTGGGAAAAGTTGCCATTCCTTTGTTGACTATTTCTAATGGCCAACAAATAACCAGAATGTTGAAGACTAATAATTTATCAAGGGCAAACAAAGGCAGTATCACACTTGAGCTGAAAGTCCTCTACAACCCTatCAAAGCAGGAATCAAAACCTTCCAGCCAAAAGAAACCATGTTTGCGGAGGACAATCCCAAGTTTAACAAAAAGCTTTTAGCACGTAATATCTATCGAGTGAGGAAGATCAGCATGGCCATTCTCTATACGCTGCAGTATATTAAAAGCTGCTTCCACTGGGAGAACACGCAGAGGAGTATTACAGCCTTCCTGATATTTGTGGTGGCAGTGTGGCTTTGGGAGCTGTTCATGCTGCCTCTCTTTCTCCTCCTGCTCATTGGCTGGAACTACTTCCACATCACACCAGGCATGGCCAGCTACAGTCAGGACTTGGAGCACATGTCGGTGGCTGAGGACGAGGACGAGGATGAAAAGGAATCAGAGAAAAGAGGACTGATGGAAAAAATCCACATGGTTCAAGAAATTGTGCTTACAGTTCAGAGCACTTTAGATGAAGTGGCTTGCATTGGGGAAAGAGTGAAAAATACATTCAACTGGTCAGTCCCGTTCTTGTCATTGTTGGCCTGCCTGGTGCTGCTTGTGGCGACTGTCGGCTTGTACTACATCCCGCTGCGCTACATAGTTTTACTGTGGGGTGTTAACAAATTTACCAAGAAGCTTTTCAACCCATATGCCATTGACAATAATGAAATGCTGGATTTCCTCAAGAGGGTGCCTTCTGATGTTCAAAAGGTGCAGTACAGCGAGCTGAGAGCCGAGCTTGGCAACCAGGGCCCGGTGAAGAAGAAACGCGGGCGCTGA
>TCONS_00025558
ATGGTTCTGATGACGCTGTCTCTGGAAGACCCCAACAGTGAGGAAAGCGATATGGGAGTGATCATTATAGAGGCCTGTCTGTCCATCCGAGAGGAACCGGCCAAACGAAATaaGTGGCTCCTAAGAAGAAAGGGATCCTTCAATAAGGGTCAACCGATAAGCCAGGCGCAGTTTGGGCGGTTCACAAAGAGTCAGGTTTGGTCAGGCGTTTACACTGTTATCTTGGTGGAAGGACAGGACATGCCAGACTGTGGACAAGGAGACGTTTACGTCCGCTTTAGACTTGGAGACCAGCGGGTCAGGAGCAAGAGTCTGTGTATTAAGGCAAACCCGCAGTGGAGGGAGTCCTTCGACTTTAACCAGTTCCAGGATGCGCAGGAAAATCTGGTGGTGGAAGTTTGCTGCAAGAGGGGCAGGAAGTCAGAGGAGTGCTGGGGAGTACTAGATATTGACCTGAGCAGACTTCCTGTCAATCAGAGACAGTTATATACTTATGAGCTGGACCCACAGAAGGGAAAACTGCGGTTTTTGGTCACCCTGACCCCATGTTCAGGTGCGTCCATCTCAGACATCCAGTCTGCTCCACTGGATAACCCTAACACCTTCGAGAAGATGCGTGAGCAATATAGACCGATGAACATTCTTGGAGACTTTAAAAATGTCGGCTTTCTTCAAGTCAAGTTAATAAGAGCCACAGATCTTCCATCAACAGATATAAGTGGTAAAAGTGACCCTTTTTGTACCCTTGAGCTGGGTAACAGCAAACTGCAAACTCACACCATATGTAAAACACTGAATCCTGAATGGAGAACAGCCCTGACTTTCCCCATTAGGGACATCCATGACGTTTTGGTGCTCACAGTCTATCATGAAGATGGAGATAAAGCTCCAGACTTCCTGGGAAAAGTTGCCATTCCTTTGTTGACTATTTCTAATGGCCAACAAATAACCAGAATGTTGAAGACTAATAATTTATCAAGGGCAAACAAAGGCAGTATCACACTTGAGCTGAAAGTCCTCTACAACCCTatCAAAGCAGGAATCAAAACCTTCCAGCCAAAAGAAACCATGTTTGCGGAGGACAATCCCAAGTTTAACAAAAAGCTTTTAGCACGTAATATCTATCGAGTGAGGAAGATCAGCATGGCCATTCTCTATACGCTGCAGTATATTAAAAGCTGCTTCCACTGGGAGAACACGCAGAGGAGTATTACAGCCTTCCTGATATTTGTGGTGGCAGTGTGGCTTTGGGAGCTGTTCATGCTGCCTCTCTTTCTCCTCCTGCTCATTGGCTGGAACTACTTCCACATCACACCAGGCATGGCCAGCTACAGTCAGGACTTGGAGCACATGTCGGTGGCTGAGGACGAGGACGAGGATGAAAAGGTGCAGTACAGCGAGCTGAGAGCCGAGCTTGGCAACCAGGGCCCGGTGAAGAAGAAACGCGGGCGCTGA
>TCONS_00025559
ACTAGATATTGACCTGAGCAGACTTCCTGTCAATCAGAGACAGTTATATACTTATGAGCTGGACCCACAGAAGGGAAAACTGCGGTTTTTGGTCACCCTGACCCCATGTTCAGGTGCGTCCATCTCAGACATCCAGTCTGCTCCACTGGATAACCCTAACACCTTCGAGAAGATGCGTGAGCAATATAGACCGATGAACATTCTTGGAGACTTTAAAAATGTCGGCTTTCTTCAAGTCAAGTTAATAAGAGCCACAGATCTTCCATCAACAGATATAAGTGGTAAAAGTGACCCTTTTTGTACCCTTGAGCTGGGTAACAGCAAACTGCAAACTCACACCATATGTAAAACACTGAATCCTGAATGGAGAACAGCCCTGACTTTCCCCATTAGGGACATCCATGACGTTTTGGTGCTCACAGTCTATCATGAAGATGGAGATAAAGCTCCAGACTTCCTGGGAAAAGTTGCCATTCCTTTGTTGACTATTTCTAATGGCCAACAAATAACCAGAATGTTGAAGACTAATAATTTATCAAGGGCAAACAAAGGCAGTATCACACTTGAGCTGAAAGTCCTCTACAACCCTatCAAAGCAGGAATCAAAACCTTCCAGCCAAAAGAAACCATGTTTGCGGAGGACAATCCCAAGTTTAACAAAAAGCTTTTAGCACGTAATATCTATCGAGTGAGGAAGATCAGCATGGCCATTCTCTATACGCTGCAGTATATTAAAAGCTGCTTCCACTGGGAGAACACGCAGAGGAGTATTACAGCCTTCCTGATATTTGTGGTGGCAGTGTGGCTTTGGGAGCTGTTCATGCTGCCTCTCTTTCTCCTCCTGCTCATTGGCTGGAACTACTTCCACATCACACCAGGCATGGCCAGCTACAGTCAGGACTTGGAGCACATGTCGGTGGCTGAGGACGAGGACGAGGATGAAAAGGAATCAGAGAAAAGAGGACTGATGGAAAAAATCCACATGGTTCAAGAAATTGTGCTTACAGTTCAGAGCACTTTAGATGAAGTGGCTTGCATTGGGGAAAGAGTGAAAAATACATTCAACTGGTCAGTCCCGTTCTTGTCATTGTTGGCCTGCCTGGTGCTGCTTGTGGCGACTGTCGGCTTGTACTACATCCCGCTGCGCTACATAGTTTTACTGTGGGGTGTTAACAAATTTACCAAGAAGCTTTTCAACCCATATGCCATTGACAATAATGAAATGCTGGATTTCCTCAAGAGGGTGCCTTCTGATGTTCAAAAG

Function

symbol description
mctp2a Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of neurotransmitter secretion. Predicted to be located in membrane. Predicted to be active in synaptic vesicle membrane. Predicted to be integral component of membrane. Is expressed in several structures, including central nervous system; embryonic structure; notochord; optic cup; and pronephric duct. Orthologous to human MCTP2 (multiple C2 and transmembrane domain containing 2).

GO:

id name namespace
GO:0046928 regulation of neurotransmitter secretion biological_process
GO:0030672 synaptic vesicle membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040724-63 Predicted to enable calcium ion binding activity. Predicted to be involved in regulation of neurotransmitter secretion. Predicted to be located in membrane. Predicted to be active in synaptic vesicle membrane. Predicted to be integral component of membrane. Is expressed in several structures, including central nervous system; embryonic structure; notochord; optic cup; and pronephric duct. Orthologous to human MCTP2 (multiple C2 and transmembrane domain containing 2).

Ensembl:

ensembl_id ENSDARG00000001414

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025557 False 2726 mRNA 0.47 21 23373683 23456101
TCONS_00025556 False 2828 mRNA 0.47 22 23373683 23456101
TCONS_00025558 False 1455 mRNA 0.48 14 23397010 23456101
TCONS_00025559 True 1264 mRNA 0.44 12 23408073 23451378

Neighbor

gene id symbol gene type direction distance location
XLOC_012803 mef2aa coding upstream 17606 23187419 ~ 23356077 (+)
XLOC_012802 cbfb coding upstream 301018 22994113 ~ 23072665 (+)
XLOC_012801 gnao1a coding upstream 398028 22793465 ~ 22975655 (+)
XLOC_012800 bcar1 coding upstream 685610 22504200 ~ 22688073 (+)
XLOC_012799 cfdp1 coding upstream 886916 22416051 ~ 22486767 (+)
XLOC_012805 NA coding downstream 2828 23458929 ~ 23463541 (+)
XLOC_012806 AL805905.1 coding downstream 16045 23472146 ~ 23472260 (+)
XLOC_012807 NA coding downstream 355283 23811384 ~ 23828058 (+)
XLOC_012808 NA coding downstream 420339 23876440 ~ 23889042 (+)
XLOC_012809 CR847971.1 coding downstream 1021425 24477526 ~ 24483285 (+)
XLOC_012793 NA non-coding upstream 1273455 22099619 ~ 22100228 (+)
XLOC_012792 CT573204.1 non-coding upstream 1291930 22078144 ~ 22081753 (+)
XLOC_012790 NA non-coding upstream 1900319 21469636 ~ 21473364 (+)
XLOC_012787 BX571884.1 non-coding upstream 2181899 21191665 ~ 21191784 (+)
XLOC_012786 NA non-coding upstream 2203935 21163424 ~ 21169748 (+)

Expression


Co-expression Network