G431238


Basic Information

Item Value
gene id G431238
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 3803250 ~ 3803641 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU495124
CCATCTCTAGCTGCTCCACGTGCCTCTGCAGAACAGGCACATGACTGGCTTTGGTCTCAAGCTCCTTCACTTTCTTGAGTCCACTCAGCACAGCTTGTCTGGCTTCCTCCACCCTCTTCCTCATCTCCACCTGCTCCTTCTTTAGAGTCCTGTTACATTCCTCCAGCATCAGCACTGTCTCGCGTGATACTCGCAGTTCTTGCTCCAGCTTCTGGTTGAAGAACATGGCCTCCTCGATCTGCACGTCCCTGGAATTCCGGATGAGCTCAACTTCTCTCAGGAAACTCTGGATGTCCTTCAGGTTCCCAGAAATGCTGGGCTTCTGGGCTGTTCGCCTTTGGTGGGCGATGAAACAGCCACCCTCTGGTTTATGTTTCGAGTGGCTTTTCCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU495124 True 392 lncRNA 0.53 1 3803250 3803641

Neighbor

gene id symbol gene type direction distance location
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L coding upstream 21208 3778052 ~ 3783019 (+)
CI01000306_03772689_03777211 DYNLRB1 coding upstream 25727 3772689 ~ 3777550 (+)
CI01000306_03704267_03746574 UNM_SA1614 coding upstream 56329 3704267 ~ 3746921 (+)
CI01000306_03677906_03697637 NA coding upstream 105458 3677906 ~ 3697792 (+)
CI01000306_03666143_03671601 NA coding upstream 130575 3666143 ~ 3672675 (+)
CI01000306_03807268_03810946 NA coding downstream 3627 3807268 ~ 3811243 (+)
CI01000306_03827847_03828735 NA coding downstream 22096 3825737 ~ 3828845 (+)
CI01000306_03889176_03889334 NA coding downstream 84707 3888348 ~ 3889371 (+)
CI01000306_04050451_04054257 NA coding downstream 246691 4050332 ~ 4054402 (+)
CI01000306_04077126_04078242 NA coding downstream 273485 4077126 ~ 4078531 (+)
G431252 NA non-coding upstream 2393 3800634 ~ 3800857 (+)
G431251 NA non-coding upstream 2639 3800216 ~ 3800611 (+)
G431249 NA non-coding upstream 5356 3797671 ~ 3797894 (+)
G431242 NA non-coding upstream 11263 3790776 ~ 3791987 (+)
G431243 NA non-coding upstream 13929 3788979 ~ 3789321 (+)
G431237 NA non-coding downstream 743 3804384 ~ 3805161 (+)
G431334 NA non-coding downstream 211844 4015485 ~ 4015758 (+)
G431364 NA non-coding downstream 212271 4015912 ~ 4016335 (+)
G431368 NA non-coding downstream 224081 4027722 ~ 4028046 (+)
G431383 NA non-coding downstream 295108 4098749 ~ 4099046 (+)
CI01000306_02974291_02976718 TP53INP2 other upstream 824093 2973156 ~ 2979157 (+)
G430719 NA other upstream 1652296 2148382 ~ 2150954 (+)
CI01000306_01209847_01210850 ACYP2 other upstream 2584693 1209395 ~ 1211232 (+)
G432583 NA other downstream 522761 4326402 ~ 4327822 (+)
G432678 NA other downstream 718541 4522182 ~ 4522536 (+)
G432958 NA other downstream 1855287 5658928 ~ 5660169 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other downstream 2176872 5975822 ~ 5986288 (+)

Expression


Co-expression Network