G432628


Basic Information

Item Value
gene id G432628
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 4307121 ~ 4307340 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU496775
ATTCGAAGGAAATGCTGGGGGTCACAGAGCTCGCAGCCATTTGACCTTCAGGGTTCAGAGGGCAGAGAACCGAGGGGTGGCACATGGCAGAAAGAGAGCCCTAATGATTTAGATATCTGTTACACACTCAGCAGAAAGCCAATCTCCTCTTATTAACCGTCTGCCCTGAGAGAGTCGAGCGTCTGTCCGCTAAATAATAAACCAACTTTGTGGAGAGTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU496775 True 220 lncRNA 0.50 1 4307121 4307340

Neighbor

gene id symbol gene type direction distance location
CI01000306_04253810_04255748 BARX1 coding upstream 50280 4253163 ~ 4256841 (+)
CI01000306_04111278_04162816 FBLN2 coding upstream 143277 4110793 ~ 4163844 (+)
CI01000306_04077126_04078242 NA coding upstream 228590 4077126 ~ 4078531 (+)
CI01000306_04050451_04054257 NA coding upstream 252719 4050332 ~ 4054402 (+)
CI01000306_03889176_03889334 NA coding upstream 417750 3888348 ~ 3889371 (+)
CI01000306_04454619_04454783 NA coding downstream 147279 4454619 ~ 4455552 (+)
CI01000306_04489350_04503649 ALPL coding downstream 182010 4489350 ~ 4505749 (+)
CI01000306_04570147_04574537 NMUR3 coding downstream 262443 4569783 ~ 4574728 (+)
CI01000306_04686121_04753101 EPHB2, EPHB2B coding downstream 378781 4686121 ~ 4753101 (+)
CI01000306_04789240_04793134 LRRC38, LRRC38A coding downstream 480830 4788170 ~ 4794154 (+)
G432627 NA non-coding upstream 251 4306649 ~ 4306870 (+)
G432622 NA non-coding upstream 6632 4300046 ~ 4300489 (+)
G432593 NA non-coding upstream 74058 4232281 ~ 4233063 (+)
G432592 NA non-coding upstream 74959 4231924 ~ 4232162 (+)
G432552 NA non-coding upstream 80869 4222212 ~ 4226252 (+)
G432629 NA non-coding downstream 6 4307346 ~ 4307693 (+)
G432571 NA non-coding downstream 37689 4345029 ~ 4347871 (+)
G432568 NA non-coding downstream 53241 4360581 ~ 4362231 (+)
G432586 NA non-coding downstream 110852 4418192 ~ 4419629 (+)
G432556 NA non-coding downstream 148795 4456135 ~ 4506862 (+)
CI01000306_03807268_03810946 NA other upstream 498123 3807268 ~ 3811243 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other upstream 524102 3778052 ~ 3783019 (+)
CI01000306_03772689_03777211 DYNLRB1 other upstream 529571 3772689 ~ 3777550 (+)
CI01000306_02974291_02976718 TP53INP2 other upstream 1327964 2973156 ~ 2979157 (+)
G430719 NA other upstream 2156167 2148382 ~ 2150954 (+)
G432583 NA other downstream 19062 4326402 ~ 4327822 (+)
G432678 NA other downstream 214842 4522182 ~ 4522536 (+)
G432958 NA other downstream 1351588 5658928 ~ 5660169 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other downstream 1673173 5975822 ~ 5986288 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other downstream 1798803 6106143 ~ 6108175 (+)

Expression


Co-expression Network