G433259


Basic Information

Item Value
gene id G433259
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 4457849 ~ 4500675 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU497480
TGACGTTACTCTGTGCGTTCGCTCGGCGGCTGCTGTGAGACATTGTTTCACACTGCAGTAAGATAGATCGATTTTAGAATATCATATTAAATGCTGGATGGCTTGTGTCGATAAATGGCATGCAATTAATTTTAAAACGTATTGTATCACGGAGAAAATTCTGTATTACTGTTACTAAAAATAAAGTTGCATCTGATTATGCTATGTTAGCTACTTGACAAAATAGTGGTTTTCTCTGAGGCATGGTAAAGCATGGTACTCAC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU497480 True 263 lncRNA 0.37 2 4457849 4500675

Neighbor

gene id symbol gene type direction distance location
CI01000306_04393554_04421160 EIF4G3, EIF4G3A coding downstream 36689 4393197 ~ 4421160 (-)
CI01000306_04387480_04391796 CSTF1.S, CSTF1 coding downstream 66053 4387010 ~ 4391796 (-)
CI01000306_04361825_04366757 NA coding downstream 91092 4361544 ~ 4366757 (-)
CI01000306_04342831_04359440 FAM120A coding downstream 98015 4342612 ~ 4359834 (-)
CI01000306_04315832_04340864 PHF2 coding downstream 116985 4315624 ~ 4340864 (-)
CI01000306_04537146_04540022 NA coding upstream 35460 4536135 ~ 4540724 (-)
CI01000306_04544349_04545034 NA coding upstream 43633 4542723 ~ 4545244 (-)
CI01000306_04577230_04587283 LACTBL1, LACTBL1B coding upstream 76018 4576693 ~ 4588427 (-)
CI01000306_04806459_04809719 NA coding upstream 305167 4805842 ~ 4810251 (-)
CI01000306_04848327_04856522 DHRS3B, DHRS3, DHRS3A coding upstream 347652 4848327 ~ 4856522 (-)
G433203 NA non-coding downstream 117166 4340401 ~ 4340683 (-)
G433223 NA non-coding downstream 195023 4262620 ~ 4262826 (-)
G433193 NA non-coding downstream 201795 4253472 ~ 4256054 (-)
G433183 NA non-coding downstream 224752 4230176 ~ 4233097 (-)
G432495 NA non-coding downstream 307244 4146044 ~ 4150605 (-)
G433271 NA non-coding upstream 21542 4522217 ~ 4522544 (-)
G433281 NA non-coding upstream 58891 4559566 ~ 4559868 (-)
G433288 NA non-coding upstream 252332 4753007 ~ 4758402 (-)
G433393 NA non-coding upstream 299741 4800416 ~ 4805206 (-)
G433411 NA non-coding upstream 359605 4860280 ~ 4861581 (-)
G432022 NA other downstream 1453958 3000236 ~ 3003891 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 2708899 1717933 ~ 1726043 (-)
G431814 NA other downstream 3145415 1311702 ~ 1312434 (-)
G431706 NA other downstream 3294511 1163027 ~ 1163338 (-)
CI01000306_00482506_00494090 PFKLB, PFKL other downstream 3974200 482482 ~ 494090 (-)
G433450 NA other upstream 860968 5361643 ~ 5383763 (-)
G433670 NA other upstream 1540339 6041014 ~ 6041283 (-)
G433985 NA other upstream 1695432 6196107 ~ 6197210 (-)
G434016 NA other upstream 1854505 6355180 ~ 6361643 (-)

Expression


Co-expression Network