XLOC_012809 (CR847971.1)


Basic Information

Item Value
gene id XLOC_012809
gene name CR847971.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 24477526 ~ 24483285 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025562
AAAAAACACTGGATTTGGTCCTTGACAATGAGCAGAGAGGTGGTTACAGCTCTGGTGAAGTAGTGTCTGGACATATTTCTCTCAAACTTTCAAGAGAAACCACAGTCAAAACTATAAAAGTTCTGCTGAAAGGATATGCTCAGGTGAGCTGGATGCATAGGCAGTCCCGCTGTTCAGAAGAGAGAAAATACCTTTCCTTATCCAAGACACTTGTAGGAGCTACAGGTATCCAGGACTTCATCCTTGATAGTGGCACACATGTAATCCCCTTTGTGCTACAGCTACCTCAGAGCCCCTTGGTTTCCTCATTTTCTGGAAAACATGGTCGTGTTCACTACATGGTGCAGGCAGTTTTAAAAAGGCCTTTCAATGAGAATCAGTGTGTTTGCAGAGATCTTTGCATCATTAATCACATTGATGTCAATTTGCCAACATTAATATCTCCTGTATCACAAACCTGTAAGAAGATGATCGGGCGTTGGATCTTTGCTTCAGGTCCCATCTCACTGACTGTCAACATAGACCGACAGGGTTATTGCAATGGAGAATCAATCCCAATAGATGCTCTGATTGAGAACCGCTCCTCTCGCCTGGTTTTGCCAAAAGCAGTGTTATACCAGAAACAGACCTACATGGCCAATGGCAAAACAAAAATCACCAAGCAGGTGGTTTCCAGTGCTTGAGGAAATGTAGTGGCATCAGACTTTTCCAGTAGATGGAATGGAAACGCACTGAAGGTTCCTCCAGTTTCTCCTTCCATACTGAATTCAGACATCCTGAGGGTGGAATACTTCCTTTCAGTTATTGTTGAGATACCAGGTGCCAAAAATCTGGAGGTGCAGCTTCCAGTGGTGATTTGTACCAATATTCTTGGCAACAGGTTTGAAATGAGCAGTCGTTCTACTATGGGTTTGCTATACCCCACATTTACTCTACCAGATGTCGCTGAAGCCCCTCCCAGCTATGCAGAGGTAATGTCAGGGGAACGATATGAGGAGCAAAGAACTTTAACCTGTCAGTCACATCCAGACTGGTTGTTGGATGGTCCAGGATTCAGCTGCATTCGTCATTTCCACGTCCAGCCTCCTCCATCTTATTCAGAG
>TCONS_00025563
AAAAAACACTGGATTTGGTCCTTGACAATGAGCAGAGAGGTGGTTACAGCTCTGGTGAAGTAGTGTCTGGACATATTTCTCTCAAACTTTCAAGAGAAACCACAGTCAAAACTATAAAAGTTCTGCTGAAAGGATATGCTCAGGTGAGCTGGATGCATAGGCAGTCCCGCTGTTCAGAAGAGAGAAAATACCTTTCCTTATCCAAGACACTTGTAGGAGCTACAGGTATCCAGGACTTCATCCTTGATAGTGGCACACATGTAATCCCCTTTGTGCTACAGCTACCTCAGAGCCCCTTGGTTTCCTCATTTTCTGGAAAACATGGTCGTGTTCACTACATGGTGCAGGCAGTTTTAAAAAGGCCTTTCAATGAGAATCAGTGTGTTTGCAGAGATCTTTGCATCATTAATCACATTGATGTCAATTTGCCAACATTAATATCTCCTGTATCACAAACCTGTAAGAAGATGATCGGGCGTTGGATCTTTGCTTCAGGTCCCATCTCACTGACTGTCAACATAGACCGACAGGGTTATTGCAATGGAGAATCAATCCCAATAGATGCTCTGATTGAGAACCGCTCCTCTCGCCTGGTTTTGCCAAAAGCAGTGTTATACCAGAAACAGACCTACATGGCCAATGGCAAAACAAAAATCACCAAGCAGGTGGTTTCCAGTGCTTGAGGAAATGTAGTGGCATCAGACTTTTCCAGTAGATGGAATGGAAACGCACTGAAGGTTCCTCCAGTTTCTCCTTCCATACTGAATTCAGACATCCTGAGGGTGGAATACTTCCTTTCAGTTATTGTTGAGATACCAGGTGCCAAAAATCTGGAGGTGCAGCTTCCAGTGGTGATTTGTACCAATATTCTTGGCAACAGGTTTGAAATGAGCAGTCGTTCTACTATGGGTTTGCTATACCCCACATTTACTCTACCAGATGTCGCTGAAGCCCCTCCCAGCTATGCAGAGGTAATGTCAGGGGAACGATATGAGGAGCAAAGAACTTTAACCTGTCAGTCACATCCAGACTGGTTGTTGGATGGTCCAGGATTCAGCTGCATTCGTCATTTCCACGTCCAGCCTCCTCCATCTTATTCAGAGATTTACCCAAATGAACACTGAGATTTTTGTCAAAGATGCTTTTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000091941

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025562 False 1103 transcribed_unprocessed_pseudogene 0.45 7 24477526 24483172
TCONS_00025563 True 1147 lncRNA 0.44 8 24477526 24483285

Neighbor

gene id symbol gene type direction distance location
XLOC_012808 NA coding upstream 588484 23876440 ~ 23889042 (+)
XLOC_012807 NA coding upstream 649468 23811384 ~ 23828058 (+)
XLOC_012806 AL805905.1 coding upstream 1005266 23472146 ~ 23472260 (+)
XLOC_012805 NA coding upstream 1013985 23458929 ~ 23463541 (+)
XLOC_012804 mctp2a coding upstream 1021425 23373683 ~ 23456101 (+)
XLOC_012810 lysmd4 coding downstream 78903 24562188 ~ 24572673 (+)
XLOC_012811 CT030043.1 coding downstream 159702 24642987 ~ 24643102 (+)
XLOC_012812 AL935295.1 coding downstream 253949 24737234 ~ 24740721 (+)
XLOC_012813 rgma coding downstream 436329 24919614 ~ 24932329 (+)
XLOC_012814 fam174b coding downstream 519922 25003207 ~ 25009666 (+)
XLOC_012793 NA non-coding upstream 2377298 22099619 ~ 22100228 (+)
XLOC_012816 NA non-coding downstream 994509 25477794 ~ 25499608 (+)
XLOC_012817 NA non-coding downstream 1009126 25492411 ~ 25496611 (+)
XLOC_012825 NA non-coding downstream 1973396 26456681 ~ 26461427 (+)

Expression


Co-expression Network