Gene
RNA
| Item | Value |
|---|---|
| gene id | G432703 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 4580597 ~ 4586360 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU496865 | True | 1857 | lncRNA | 0.39 | 3 | 4580597 | 4586360 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_04570147_04574537 | NMUR3 | coding | upstream | 5869 | 4569783 ~ 4574728 (+) |
| CI01000306_04489350_04503649 | ALPL | coding | upstream | 74848 | 4489350 ~ 4505749 (+) |
| CI01000306_04454619_04454783 | NA | coding | upstream | 125045 | 4454619 ~ 4455552 (+) |
| CI01000306_04253810_04255748 | BARX1 | coding | upstream | 323756 | 4253163 ~ 4256841 (+) |
| CI01000306_04111278_04162816 | FBLN2 | coding | upstream | 416753 | 4110793 ~ 4163844 (+) |
| CI01000306_04686121_04753101 | EPHB2, EPHB2B | coding | downstream | 99761 | 4686121 ~ 4753101 (+) |
| CI01000306_04789240_04793134 | LRRC38, LRRC38A | coding | downstream | 201810 | 4788170 ~ 4794154 (+) |
| CI01000306_04859604_04861501 | NA | coding | downstream | 273178 | 4859538 ~ 4861570 (+) |
| CI01000306_04863197_04868703 | NA | coding | downstream | 276837 | 4863197 ~ 4868794 (+) |
| CI01000306_04958429_04977273 | NA | coding | downstream | 371981 | 4958341 ~ 4977418 (+) |
| G432697 | NA | non-coding | upstream | 12761 | 4567610 ~ 4567836 (+) |
| G432680 | NA | non-coding | upstream | 50071 | 4530317 ~ 4530526 (+) |
| G432672 | NA | non-coding | upstream | 70888 | 4509439 ~ 4509709 (+) |
| G432556 | NA | non-coding | upstream | 73735 | 4456135 ~ 4506862 (+) |
| G432586 | NA | non-coding | upstream | 160968 | 4418192 ~ 4419629 (+) |
| G432745 | NA | non-coding | downstream | 235790 | 4822150 ~ 4822382 (+) |
| G432768 | NA | non-coding | downstream | 275968 | 4862328 ~ 4862623 (+) |
| G432795 | NA | non-coding | downstream | 358172 | 4944532 ~ 4944764 (+) |
| G432907 | NA | non-coding | downstream | 626431 | 5212791 ~ 5213089 (+) |
| G432912 | NA | non-coding | downstream | 636458 | 5222818 ~ 5223318 (+) |
| G432678 | NA | other | upstream | 58061 | 4522182 ~ 4522536 (+) |
| G432583 | NA | other | upstream | 252775 | 4326402 ~ 4327822 (+) |
| CI01000306_03807268_03810946 | NA | other | upstream | 771599 | 3807268 ~ 3811243 (+) |
| CI01000306_03778075_03781910 | MAP1LC3A, MAP1LC3A.L | other | upstream | 797578 | 3778052 ~ 3783019 (+) |
| CI01000306_03772689_03777211 | DYNLRB1 | other | upstream | 803047 | 3772689 ~ 3777550 (+) |
| G432958 | NA | other | downstream | 1072568 | 5658928 ~ 5660169 (+) |
| CI01000306_05976516_05985251 | TMEM178A, TMEM178 | other | downstream | 1394153 | 5975822 ~ 5986288 (+) |
| CI01000306_06106248_06107449 | GM2573, CS056, WDR83OS | other | downstream | 1519783 | 6106143 ~ 6108175 (+) |
| G433724 | NA | other | downstream | 1522251 | 6108611 ~ 6129778 (+) |
| G434545 | NA | other | downstream | 2532957 | 7119317 ~ 7119859 (+) |
