Gene
RNA
| Item | Value |
|---|---|
| gene id | G433411 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 4860280 ~ 4861581 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU497641 | True | 1120 | lncRNA | 0.50 | 3 | 4860280 | 4861581 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_04848327_04856522 | DHRS3B, DHRS3, DHRS3A | coding | downstream | 3758 | 4848327 ~ 4856522 (-) |
| CI01000306_04806459_04809719 | NA | coding | downstream | 50029 | 4805842 ~ 4810251 (-) |
| CI01000306_04577230_04587283 | LACTBL1, LACTBL1B | coding | downstream | 271853 | 4576693 ~ 4588427 (-) |
| CI01000306_04544349_04545034 | NA | coding | downstream | 315036 | 4542723 ~ 4545244 (-) |
| CI01000306_04537146_04540022 | NA | coding | downstream | 319556 | 4536135 ~ 4540724 (-) |
| CI01000306_04870702_04872912 | KLHDC7A | coding | upstream | 8947 | 4870528 ~ 4872937 (-) |
| CI01000306_04883506_04908414 | NA | coding | upstream | 21822 | 4883403 ~ 4909520 (-) |
| CI01000306_05007257_05008896 | NA | coding | upstream | 145050 | 5006631 ~ 5008896 (-) |
| CI01000306_05250669_05357112 | ARHGEF10L, ARHGEF10LA | coding | upstream | 389088 | 5250669 ~ 5357112 (-) |
| CI01000306_05414347_05434965 | CHD5 | coding | upstream | 552690 | 5414271 ~ 5434965 (-) |
| G433393 | NA | non-coding | downstream | 55074 | 4800416 ~ 4805206 (-) |
| G433288 | NA | non-coding | downstream | 101878 | 4753007 ~ 4758402 (-) |
| G433281 | NA | non-coding | downstream | 300412 | 4559566 ~ 4559868 (-) |
| G433271 | NA | non-coding | downstream | 337736 | 4522217 ~ 4522544 (-) |
| G433259 | NA | non-coding | downstream | 359605 | 4457849 ~ 4500675 (-) |
| G433412 | NA | non-coding | upstream | 707 | 4862288 ~ 4862605 (-) |
| G433207 | NA | non-coding | upstream | 58810 | 4920391 ~ 4932475 (-) |
| G433197 | NA | non-coding | upstream | 96138 | 4957719 ~ 5070898 (-) |
| G433198 | NA | non-coding | upstream | 173632 | 5035213 ~ 5096675 (-) |
| G433194 | NA | non-coding | upstream | 186003 | 5047584 ~ 5054440 (-) |
| G432022 | NA | other | downstream | 1856389 | 3000236 ~ 3003891 (-) |
| CI01000306_01723684_01726043 | MAFGA, MAFGB, MAFG | other | downstream | 3111330 | 1717933 ~ 1726043 (-) |
| G431814 | NA | other | downstream | 3547846 | 1311702 ~ 1312434 (-) |
| G431706 | NA | other | downstream | 3696942 | 1163027 ~ 1163338 (-) |
| G433450 | NA | other | upstream | 500062 | 5361643 ~ 5383763 (-) |
| G433670 | NA | other | upstream | 1179433 | 6041014 ~ 6041283 (-) |
| G433985 | NA | other | upstream | 1334526 | 6196107 ~ 6197210 (-) |
| G434016 | NA | other | upstream | 1493599 | 6355180 ~ 6361643 (-) |
| G434086 | NA | other | upstream | 1575825 | 6437406 ~ 6452251 (-) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | XLOC_003515 | aadacl4 | coding | NC_007122.7 | CM002895.2 | 28617564 ~ 28619811 (+) |
