XLOC_012810 (lysmd4)


Basic Information

Item Value
gene id XLOC_012810
gene name lysmd4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 24562188 ~ 24572673 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025564
ACAAGCACCCTCGGTTGCGGTGTGAAGTTACTTTCTAAAATGACACTTCGGGATATTTTTGTCGGCACGATGTTGCTGTTTTTGTCTAAAAAGTTGCAGTGATGAGGCGTGGAGATCCTCCCCCTCGAGCCTTTCAGGCTCCAGTAGATGTACATGCCAGTGCAGATGGCCAAGTGTATATGTTCAGGCACAGACAAGAAGAACCGGAAGCGTCGTCAGAAGATGAGGAACTCAATGTCATGGAGCTCAGGCCTAGGAGCAGAGATTCATCCTCAAAAGAGAAAGAAGGAGTGGGAGAAATGCTCTTGCTGGAACGGGACATCTCCCATGAGGACAATCTCAGCAAACTGGCCCTTCAGTATGGATGCAAGGTGGCTGACATAAAAAGGGTGAACAACCTTTTTCAAGAGCAGGATATGTATGCACTGAAGTCTATCAAAATCCCAGTAAGAAAGCATGGCTTGCTAACTGAGGCCATCTCTGAGCTCAGGACGCCCCAGCAGAGACCTTCCCATGATGCAGCACCATCAAACAGTGCTATGGCAAGTGTATCAGGAAGACCCCAAGTGCAGGAATACACCAATTATCTTAAAGAGGTGGACAATGATATTGAGCGTctgatccaaaacacagacaaTGTAGAAGAAGTGTTTTCTGCAAGTTCCAGGGTATCTAGAGGATGGGGATGGAGAAGCCAGCGTTTGCGCAGTAATGGTGCAGACTGGGGGATCCAGTGGTGGAATGCTGTTATCGCCATGCTACTCATTGGCATTGTCCTACCAATATTCTATGTGGTATATTATAAAACTAAAGACAGTGGTGAATCTGCCGTGGACAATGTAGGTGTCAACATATCTGTTTCTACCTCAAACAGTACTAGGGAATATAATGGGAAGTCACCTTGAGGAAAAAGAGGTAGTGAGGCCTTTGAAATTTCACGTTTGGTTTGATGCCTATATTTTTGTGCTATTTTGTAGTTAAATTTAGTATTACATTATGTCGCCAATACACACATATCATTATACATTTAAGTAAAAAGATTACTCCTCAAAAAAAGGGCTCAAATGACTGGAATATGGTACAATCCCAATTTATTTTGCACAAAATAGAGCACATTATCCAAAatttgtgttctacagaaaatgttatgttttaagaGAAAATTATATCAAATGAGATCATGAGTTAGCATTACAGTATAAAGCATTGCAACTCTTATTGGTTTTATGGGTGctcttattttattgtattatgaaACGGTATTATGTAACagccttttttaaaaaatcattaatatttaTGTACTGGCTTGGTATATCAATGTTTGATAAAATGAGTGGAATAATagcaacaaaagcaaaacaaaataagcCTTTTTCTGTTAACTTCATACCTGTTTCTCTGAATGCATTGTGTGCTAACTCTAATATGTatctttgttttgattttacCAGAACACTATTGCCAAATGGCTGTATTAATATGAAAAGGCAACTGTGCCAAAGCATAGATGTGTATTAAATAACTGTTTGTTCAGTCATTAAAAGTGCAATATCAATAGAAGACAAATACCACAGGAAGAACTAAATTCATGGGCAAATGGACACATTTTGACCTTTGGACCATGACaataaaatatatcttttaaa

Function

symbol description
lysmd4 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system. Orthologous to human LYSMD4 (LysM domain containing 4).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1895 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system. Orthologous to human LYSMD4 (LysM domain containing 4).

Ensembl:

ensembl_id ENSDARG00000068702

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025564 True 1649 mRNA 0.39 3 24562188 24572673

Neighbor

gene id symbol gene type direction distance location
XLOC_012809 CR847971.1 coding upstream 78903 24477526 ~ 24483285 (+)
XLOC_012808 NA coding upstream 673146 23876440 ~ 23889042 (+)
XLOC_012807 NA coding upstream 734130 23811384 ~ 23828058 (+)
XLOC_012806 AL805905.1 coding upstream 1089928 23472146 ~ 23472260 (+)
XLOC_012805 NA coding upstream 1098647 23458929 ~ 23463541 (+)
XLOC_012811 CT030043.1 coding downstream 70314 24642987 ~ 24643102 (+)
XLOC_012812 AL935295.1 coding downstream 164561 24737234 ~ 24740721 (+)
XLOC_012813 rgma coding downstream 346941 24919614 ~ 24932329 (+)
XLOC_012814 fam174b coding downstream 430534 25003207 ~ 25009666 (+)
XLOC_012815 si:dkeyp-59c12.1 coding downstream 652851 25225524 ~ 25226704 (+)
XLOC_012816 NA non-coding downstream 905121 25477794 ~ 25499608 (+)
XLOC_012817 NA non-coding downstream 919738 25492411 ~ 25496611 (+)
XLOC_012825 NA non-coding downstream 1884008 26456681 ~ 26461427 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_01639151_01640992 LYSMD4 coding CI01000013 null 1638986 ~ 1640992 (-)