XLOC_012812 (AL935295.1)


Basic Information

Item Value
gene id XLOC_012812
gene name AL935295.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 24737234 ~ 24740721 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025566
tttttttactttaaaaaaatattaaatttcaagtactaagtttaaaaatgttttcggctgatatttttcattttaaattatttattaaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCATCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGAAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTGGAAGACTTTGGTC
>TCONS_00025569
tttttttactttaaaaaaatattaaatttcaagtactaagtttaaaaatgttttcggctgatatttttcattttaaattatttattaaagttggggtcattgtatgtggcgatctattttttacagtctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCATCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGAAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATATTGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAATAACTTTCCTGCTTGTTTGCTACTGAAAAGTActggtatgtatttgtattttttggcacagacataagcataaggttacccagtccaaaggatattaatatatttttatgttgttgtgttcttcttttaagattcgacatgtggccttaacgaagaggggttaaaaggtctatggatcatcattctcaaaaagcaacaaaataactgagaaataaacaacaataagaTGGTGCAATCTAGAGACCTGCAAGGTACCTGCAAGTTTTGGATGGAGCAgagaacatagattttttttaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaaaattaaataaaattgtcatcatctataa
>TCONS_00025567
tctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCATCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGctcataggaactccaatcttcccaactgtgagagggccttgctccagtgactGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtgttactattactgtcatttttttttcagtagcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATA
>TCONS_00025568
tctatgctcgctatcccaaggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCATCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGctcataggaactccaatcttcccaactgtgagagggccttgctccagtgactGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATATTGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAATAACTTTCCTGCTTGTTTGCTACTGAAAAattcgacatgtggccttaacgaagaggggttaaaaggtctatggatcatcattctcaaaaagcaacaaaataactgagaaataaacaacaataagaTGGTGCAATCTAGAGACCTGCAAGGTACCTGCAAGTTTTGGATGGAGCAgagaacatagattttttttaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaaaattaaataaaattgtcatcatctataa
>TCONS_00025570
ggttcattgcgatcccaaggttcactgcggttttccacaagCCTGTTTCTGCCTATCATCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGctcataggaactccaatcttcccaactgtgagagggccttgctccagtgactgtcaGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGAAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtgttactattactgtcatttttttttcagtagcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATATTGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAATAACTTTCCTGCTTGTTTGCTACTGAAAAGTActgattcgacatgtggccttaacgaagaggggttaaaaggtctatggatcatcattctcaaaaagcaacaaaataactgagaaataaacaacaataagaTGGTGCAATCTAGAGACCTGCAAGGTACCTGCAAGTTTTGGATGGAGCAgagaacatagattttttttaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaaaattaaataaaattgtcatcatctataa
>TCONS_00025571
ttcaggttctttagatttctttaaaaatccaattttgttttctaataagcaaaaagtaaaatcactttacccatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttatatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCATCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGAAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATATTGCATGactctgctgacccagcaacaaagaggagg
>TCONS_00025573
acccatgtttatatgttaaattgcacttgtctctctctctatctctgttaacacatttatatttgtttgattaattcttGTGTCTTTCAGCCTGTTTCTGCCTATCATCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGGTTAGTGAAGTTTTTCATTccatgtatattaaatatctacattgtttaggcatatatgattgtatgagataaaatgcatttattctttcaCTACTATTGTAAGAACAGAAAGAAACGCGttagttttactattactattgtttatgacaaacattaaaaaactacagcataagctcacaaaatattgtggcctaactgtttaaaactaattgttctgggtgttgatagcggccaaccattttttttctttttcagaaagtattttgttttgtctgattttatgacaccttataggccatcaactgcccacattggggtttaggaaattagaactgcttatgctgcttgtctactagtcttaggataagttagaaatgttataaatgtacatttttttgttgtttttatctggtacagctcataggaactccaatcttcccaactgtgagagggccttgctccagtgactgtcagtgtgtacttcattgtttccattagtccctgtatctgtagacctaggtgacagtgggctagagtaaaattttggttttatttaaactaaggcatactgatggcctttttatctcagatttggtcatgcaagtattaatatatcctaaagtatttttatattctttccattggtggaaaagatgttggtataattatttttaatggactgctaagatctcagcagacatttttctgagaTATTCTTGAGTGGGAGTCTGTGCAATACAAGGTGGATAGTATTTGCAAGGAAGAGCTTCATCTGTTCTGCTTCCACACTAGATATACTGCCAATTTAAGTAGATATGAACCATAAGCATAACCATTTCAAGAATGCACGaggtactttaaactgtatgtgttgaaactaaattaacaagaaaacagcTCTGTGATGTTCACCTAAGAAAATTAgattagaagatataaactgTTATGCACTTGTTCTGTACTGTTTCATTCCTTTTTCAAACACTGGCATTTTTGAAGGTTTATTTACAGCTAAGGATTAAGAATTGACAGGAAGATTTGTGGACTACATCAACTAATGACACTACCTCCAAAGAGTTGCAAAAAGCTGTCCAAAGTTTCAGCACCATCTTTAAGCCCATGATTTTAGTGTGTTTCATGCCTAATCACATGAGTTTATATCTGAGATAGATGAACTATGTAATTGTCTTAAACTGATCTACAAGTAAATGCCAAAACTTattggtttacttatttatttatttgtttgtttgtttgtttgtatatgttaacCAGGTGAAATGGAGTGAGGCATACCAGGATATGCCTGGTTTTACTTTTGGAAAGGAGGTTGAACAGTGCAATATTTCTTCTATAGGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGGTGAggaaattcttattaatattacatgtagtcatgaaaaattgtgttactattactgtcatttttttttcagtagcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATATTGCATGGTATGTACACTAGACTTCTGTCAGTGTTGATTCTTTAAAAGTTGACGTATAATCCTTGTTATACAActttcttttcataaatatatttcagactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAATAACTTTCCTGCTTGTTTGCTACTGAAAAGTActggtatgtatttgtattttttggcacagacataagcataaggttacccagtccaaaggatattaatatatttttatgttgttgtgttcttcttttaagattcgacatgtggccttaacgaagaggggttaaaaggtctatggatcatcattctcaaaaagcaacaaaataactgagaaataaacaacaataagaTGGTGCAATCTAGAGACCTGCAAGGTACCTGCAAGTTTTGGATGGAGCAgagaacatagattttttttaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaaaattaaataaaattgtcatcatctataa
>TCONS_00025572
attcttGTGTCTTTCAGCCTGTTTCTGCCTATCATCATGAGTGATTCCTCAATACTCAGATTTATCATCAAGATCTCAATTATAAGCTCAAGTTTTGATGACAACTTGGTGATCTGCAGAAAGCACCACCATGTAAGGAAGGCCAAGACCACTCTGGAATCAGTCAAGGctcataggaactccaatcttcccaactgtgagagggccttgctccagtgactgtcaGATTGCAGTGACCAGACATGCTACTGTAACTCTCATGGTCATGTGCTGGAATTAGCAGATATTCAACAATTTGGCCATCTCGCTGACCTGTTGATATCAGAAGACCGCAACAGCTCTGCAAAGCAAGTTGGAAAACAGAATCCATGAAACTGGCAGTGACTGGAAACCAGTTGGAAGACTTTGGTCTGTGATGTAGAGGAGTGGGCAGAGGcagaagcAAAGACAACAAAAAGAAGAAGTGATGTGGATGTCTTCGTCATATTGCATGactctgctgacccagcaacaaagaggagggtgttcaacatcatcctgctagtcaggattcttcaggagaagcagtggattcttgtggcagagatggccaaccactataaatacctttcAACTCATCCTGGTTCTTTCAAATAACTTTCCTGCTTGTTTGCTACTGAAAAattcgacatgtggccttaacgaagaggggttaaaaggtctatggatcatcattctcaaaaagcaacaaaataactgagaaataaacaacaataagaTGGTGCAATCTAGAGACCTGCAAGGTACCTGCAAGTTTTGGATGGAGCAgagaacatagattttttttaaataaagctccagctgatgagtatgacattgactgtggattttcttttactgtaatccagaagaggatgaccttaaccctgaatctaaagcatgtaataaaatctgtaaaaaaattaaataaaattgtcatcatctataa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092636

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025566 False 606 processed_transcript 0.39 4 24737234 24739896
TCONS_00025569 False 1264 lncRNA 0.38 6 24737234 24740721
TCONS_00025567 False 601 processed_transcript 0.43 5 24737360 24740047
TCONS_00025568 False 1006 lncRNA 0.41 8 24737360 24740721
TCONS_00025570 False 1155 processed_transcript 0.40 7 24737379 24740721
TCONS_00025571 False 689 processed_transcript 0.40 5 24737959 24740174
TCONS_00025573 False 2610 lncRNA 0.35 2 24738027 24740721
TCONS_00025572 True 967 lncRNA 0.41 7 24738100 24740721

Neighbor

gene id symbol gene type direction distance location
XLOC_012811 CT030043.1 coding upstream 94132 24642987 ~ 24643102 (+)
XLOC_012810 lysmd4 coding upstream 164561 24562188 ~ 24572673 (+)
XLOC_012809 CR847971.1 coding upstream 253949 24477526 ~ 24483285 (+)
XLOC_012808 NA coding upstream 848192 23876440 ~ 23889042 (+)
XLOC_012807 NA coding upstream 909176 23811384 ~ 23828058 (+)
XLOC_012813 rgma coding downstream 178893 24919614 ~ 24932329 (+)
XLOC_012814 fam174b coding downstream 262486 25003207 ~ 25009666 (+)
XLOC_012815 si:dkeyp-59c12.1 coding downstream 484803 25225524 ~ 25226704 (+)
XLOC_012816 NA coding downstream 737073 25477794 ~ 25499608 (+)
XLOC_012817 NA coding downstream 751690 25492411 ~ 25496611 (+)
XLOC_012806 AL805905.1 non-coding upstream 1264974 23472146 ~ 23472260 (+)
XLOC_012825 NA non-coding downstream 1715960 26456681 ~ 26461427 (+)
XLOC_012828 AL935332.1 non-coding downstream 2007090 26747811 ~ 26747927 (+)
XLOC_012832 NA non-coding downstream 2256855 26997576 ~ 26998589 (+)

Expression


Co-expression Network