XLOC_012814 (fam174b)


Basic Information

Item Value
gene id XLOC_012814
gene name fam174b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25003207 ~ 25009666 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025576
GCTCTTCCTCCATAACAGCGCGCTGCTGCCAAACAAACTCTGCACATTGGTCCTCGTCTGGACCCTCCCGGAGCTCTTCCGGGTGTGGATAACCCACATTTCCTCCTGCCGACACGCATTCCCAAGAAAACATCCTGGATAACGGACCGAGCAGCGTGTGAGTGGAAACCAAAGAATAAAACCGAGCCCTCGAGGTGGAAAACAAATAGCAGATACTTGAGATACTGGACATGATTGGCGAGCGAGCTGTGGACTATTTGAGATGTCAGAGCATCATTTACACACATCATTCGTCAGACAGCTGTTCTTCGCGTTTCGAGTTGTAGCGCTCAGACcttctctgcactgactcaattCAAATACACGAGACATTGAGAAGAAAGAGGTTTAAATCGGGAAACAACATGTGGCTATATACTTTTGCTGTAGCGCTTATTGTCATTGCGCAGGAGATAAACGGAGAGCCACATACGCGTCCATCCTCCGCAACGCCGCTGAATGCAACATTACCGCCTCAAGAAGAAGGTTCAGCACAAAATACAACAGATGCTGCGGTTGGATCCCGCCTTTCTACAATATTGAGGGATCTTCCTACCATCAAAAACATTTCGATTTTCATCTGCGTGCTAACAACCTTACTTATCACGTGCCTTGTCATAAAAATATGCAGATCAGCAAGGAAGAtcagaaaaacaagaaaatatgacATCATCACAACTCCAGCAGAGCGGGTAGAGATGGCTCCTTTAAATGAAGAAAACGACGAAGAGGACGATTCCACTCTATTTGATGTCAAATACAGGTGAACGGTATAGCACTCTCGGAGTCATTGTTGAAGGTCTTGTAAAACCCCCTGGATTCCTGCATGAACACTTCTATACAGGGAATGAGCTCCTGCACCTTCGATCCATTTCTCCAAAGCCGTGGAACATCAGTGGAACCGGTCAGGAAATTTTATCCGATGTTTCCTGGTGTGTGCATTTGTTCTGACATTCCAGACCAACGAAGCACAGAATCTTAATCAAATATTGATGAAAAACCTTTTCTTTGTTGCAGGGAAAAGAAATATTAAGCTTAATCCTCCAAAAATACGTTATTGCACAAccttttgctgttgttttttccaacaaaacattccatttgttaattaaataaatatgcataattgCCCTTGAATGTATTTGGCAGCTTGAATATTTCAGTTACATTATATCACATTGAGGCTATTAtatgtcatattt
>TCONS_00025577
CAAGAAAACATCCTGGATAACGGACCGAGCAGCGTGTGAGTGGAAACCAAAGAATAAAACCGAGCCCTCGAGGTGGAAAACAAATAGCAGATACTTGAGATACTGGACATGATTGGCGAGCGAGCTGTGGACTATTTGAGATGTCAGAGCATCATTTACACACATCATTCGTCAGACAGCTGTTCTTCGCGTTTCGAGTTGTAGCGCTCAGACcttctctgcactgactcaattCAAATACACGAGACATTGAGAAGAAAGAGGTTTAAATCGGGAAACAACATGTGGCTATATACTTTTGCTGTAGCGCTTATTGTCATTGCGCAGGAGATAAACGGAGAGCCACATACGCGTCCATCCTCCGCAACGCCGCTGAATGCAACATTACCGCCTCAAGAAGAAGGTTCAGCACAAAATACAACAGATGCTGCGGTTGGATCCCGCCTTTCTACAATATTGAGGGATCTTCCTACCATCAAAAACATTTCGATTTTCATCTGCGTGCTAACAACCTTACTTATCACGTGCCTTGTCATAAAAATATGCAGATCAGCAAGGAAGAtcagaaaaacaagaaaatatgacATCATCACAACTCCAGCAGAGCGGGTAGAGATGGCTCCTTTAAATGAAGAAAACGACGAAGAGGACGATTCCACTCTATTTGATGTCAAATACAGGTGCATTACCACAACACGATTTATGTGTAAATAA

Function

symbol description
fam174b Predicted to be involved in Golgi organization. Predicted to be located in Golgi apparatus and plasma membrane. Orthologous to human FAM174B (family with sequence similarity 174 member B).

GO:

id name namespace
GO:0007030 Golgi organization biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-78 Predicted to be involved in Golgi organization. Predicted to be located in Golgi apparatus and plasma membrane. Orthologous to human FAM174B (family with sequence similarity 174 member B).

Ensembl:

ensembl_id ENSDARG00000068709

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025576 False 1241 mRNA 0.43 3 25003207 25009666
TCONS_00025577 True 714 mRNA 0.43 2 25003329 25006998

Neighbor

gene id symbol gene type direction distance location
XLOC_012813 rgma coding upstream 70878 24919614 ~ 24932329 (+)
XLOC_012812 AL935295.1 coding upstream 262486 24737234 ~ 24740721 (+)
XLOC_012811 CT030043.1 coding upstream 360105 24642987 ~ 24643102 (+)
XLOC_012810 lysmd4 coding upstream 430534 24562188 ~ 24572673 (+)
XLOC_012809 CR847971.1 coding upstream 519922 24477526 ~ 24483285 (+)
XLOC_012815 si:dkeyp-59c12.1 coding downstream 215858 25225524 ~ 25226704 (+)
XLOC_012816 NA coding downstream 468128 25477794 ~ 25499608 (+)
XLOC_012817 NA coding downstream 482745 25492411 ~ 25496611 (+)
XLOC_012818 pex11a coding downstream 536561 25546227 ~ 25550960 (+)
XLOC_012819 fkbp16 coding downstream 643933 25653599 ~ 25745636 (+)
XLOC_012808 NA non-coding upstream 1114165 23876440 ~ 23889042 (+)
XLOC_012807 NA non-coding upstream 1175149 23811384 ~ 23828058 (+)
XLOC_012825 NA non-coding downstream 1447015 26456681 ~ 26461427 (+)
XLOC_012828 AL935332.1 non-coding downstream 1738145 26747811 ~ 26747927 (+)
XLOC_012832 NA non-coding downstream 1987910 26997576 ~ 26998589 (+)

Expression


Co-expression Network