G433027


Basic Information

Item Value
gene id G433027
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5351369 ~ 5352445 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU497209
CAGCAATATAGAGCAGTGGAAAAGTGTGTCAGTTACGCCCGGAGTTAGTAGCGATTAGGCAAGTGCTGGCCAACACTGCACTCTTGTGGTGGCAAGGCAAACCTTCACAGACAATCGAAGCATCACAAGAGCCTGCATCTCAAATAAATCATCGAAACACATAGCAATCCATCAGCCTGCAACCTTGGAGGGTTTAAATCTTTTTAAGGACCTTTGTGGTTTATCATTATGAGGAATGTGGAAATGTGTCTGAAGATAAATCAGACATTTGGCAGGATGTAATTATTGCAGTTGTGGGAATCTACTAACACACACGCACCTTGCTGCGGGTTGGCGCCCTCTCAGAGTCGGACTGCTCATCATAGCTTTCAAACTCACTTGAGCTCCAGCCATTTTTGGGCCCCTGCAAGCCCTCCTCTTTCTGAACGTCCTCATAGATCAAGTCAGCTGACACACAGAGCAATGCAGTTTTCAGTACAGTCCTGTAAATACTGTAGGTCTTCTGACAACGACATGCTGATACAAAAAAACATTTACCTACTGTAACATAACACATAAAAATCAAACTAGACTAGAAGGGTGTTTCTTCAACTATAGGCACTTTTGGCCCATGTGGACTTAATTTATCGCAAATTTCATTTCCACCATATCTAGGGCTGTGACGGTCGGTATGACAACCGCGCCACCGCGGTCGTGGAGTGTCACCGGCGGTAGTGTGACATATATATATCTCAGAGGTCGCGTTAACCGATTTTTTTTTAGCAATCTGAAGAATTATTTTTTTTTTTTTTTAAATCTGAAGCCCGTCCGTCATTTTGACAGATTACTGAGGCTGTAAATGTAATTCCGACCCCTGTCCAGTTGGTGGTGAGTGCGCTCCAGTGTGTCTGCAGAGCTTGAGTTCAGTCTCCAGAATAAAATGATGCATTTGATCACACACAGGCGAGCACCCAGTTTAAGTCAATTTTATAATAATAAAGTTATAATACTTATACTTACATAATTAAGTTTCTAATCCAGTTCGTTTTGTTTTAAATGGTTCGTTTTGTTATTTTTCTTGCTGACTATCAAGTTTAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU497209 True 1077 lncRNA 0.42 1 5351369 5352445

Neighbor

gene id symbol gene type direction distance location
CI01000306_04958429_04977273 NA coding upstream 373951 4958341 ~ 4977418 (+)
CI01000306_04863197_04868703 NA coding upstream 482575 4863197 ~ 4868794 (+)
CI01000306_04859604_04861501 NA coding upstream 489799 4859538 ~ 4861570 (+)
CI01000306_04789240_04793134 LRRC38, LRRC38A coding upstream 557215 4788170 ~ 4794154 (+)
CI01000306_04686121_04753101 EPHB2, EPHB2B coding upstream 598268 4686121 ~ 4753101 (+)
CI01000306_05358831_05362667 NA coding downstream 6386 5358831 ~ 5362710 (+)
CI01000306_05368199_05371572 NA coding downstream 15469 5367914 ~ 5371880 (+)
CI01000306_05390270_05392867 NA coding downstream 37128 5389573 ~ 5393074 (+)
CI01000306_05399614_05410516 NA coding downstream 46869 5399314 ~ 5410886 (+)
CI01000306_05456160_05473514 NA coding downstream 103715 5456160 ~ 5473514 (+)
G433026 NA non-coding upstream 42 5351014 ~ 5351327 (+)
G433025 NA non-coding upstream 499 5349857 ~ 5350870 (+)
G433024 NA non-coding upstream 1596 5349571 ~ 5349773 (+)
G433023 NA non-coding upstream 2083 5348883 ~ 5349286 (+)
G433022 NA non-coding upstream 2622 5348334 ~ 5348747 (+)
G433028 NA non-coding downstream 33 5352478 ~ 5352808 (+)
G432984 NA non-coding downstream 937 5353382 ~ 5355406 (+)
G432988 NA non-coding downstream 3586 5356031 ~ 5358285 (+)
G432992 NA non-coding downstream 75441 5427886 ~ 5429149 (+)
G432941 NA non-coding downstream 96346 5448791 ~ 5453426 (+)
G432678 NA other upstream 828833 4522182 ~ 4522536 (+)
G432583 NA other upstream 1023547 4326402 ~ 4327822 (+)
CI01000306_03807268_03810946 NA other upstream 1542371 3807268 ~ 3811243 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other upstream 1568350 3778052 ~ 3783019 (+)
CI01000306_03772689_03777211 DYNLRB1 other upstream 1573819 3772689 ~ 3777550 (+)
G432958 NA other downstream 306483 5658928 ~ 5660169 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other downstream 628068 5975822 ~ 5986288 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other downstream 753698 6106143 ~ 6108175 (+)
G433724 NA other downstream 756166 6108611 ~ 6129778 (+)
G434545 NA other downstream 1766872 7119317 ~ 7119859 (+)

Expression


Co-expression Network