G433450


Basic Information

Item Value
gene id G433450
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5361643 ~ 5383763 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU497685
GAAGAGGGGAGCTCATTCAGCCTACGAGAGCAAGGAGGAGTGAAGCGGTTAGTCTGGAACTTGCTGCCTGTGGGAAAGTAAACAACAGTATTTGCCGCCCTCTCAGAGGCAATAGCTACAGACCGACAGCAGCGGATAAACAGAGGATGAGGATGTGTTCAAGGAGCCAGCTGATTTCATAGCAGGAAGTGCATGGGAGGTTGTTGGGATTAAAGTCCCTCTTGGGAGGTGCTGAAGCTTTCCTGTGGAAGTACTACTGAGGACAAAAAGAGCCTATGTCCAAAAGTTCATCTCATCAGCAGCTGGAGGAGGATGTGGAGGAAGATGAGCAAAGAGAGAAATTCAAATTTGAAGATGAGTTTGACAAACAAAAAGGCAAGACTGTATCTGGAGATGAGACATCAGGCAAATGTAGTGAGCCTAAGACACAGTCAAGCAAATTGGAAGAGACTCAGGAAAAACACACAGATCATCCCTCTCAAGCCATCACTACAGTTACAGCTGCTGGTCAGGAGTGTACCAGTACTTATAGCACTAATTTGTCAGCCACCAACAAAGGGTAAGTAACAAATTAGTTCACTTCAAAACACCAGACAGACATTTGCTAATGATATTTTATTGACGTTTCAAAACACAAACATCAGCCAAAAACAGGTAGTCAGCTATTGTTGCAACAGCCTGAACATGCTCTTGGATGAATGTGGCCTTCTTTGGGCAGGTCTAGGAGCATTTTGACCTGTGACAGACTGGTAATTCAATTGCGTTGGAAACTGAAGTCCAGGTTGCACTGACTGCGACATAGGCTCAACGCTTGAGACAAAGAGATTGCTGGGCTGCTCCAGGGCTTGGGAACCTGATCTGGATACAGATTGGTAACTTGATTGCCCAGGCATTGAAGAGGTCTGGAATCCAGGCTGAGAGACGGTCTCATAACTTGACTGTACCTGGTACCTGGACTGCACTGGCATGGCTAGGGATGAGTAGCCAGACTGAGATAGAGACTGGTGGCTAGGCAGCATTTCAGGCTGGGAACCAGACTGCCCTGCCATAGAAGACATCTGGTATCCAGACTGAGAAACTTTCTCAGAACTTGACTGTGCCTGGTACTTGGACTGCACTGGCATGGCTTGGGAATTGTAGCTGGGCTGACCTAGAGACTGGCGGCTAGGCAGTATTTGAGGCTGGTAGTCTCCAAGAGTTCCCAGCTTGCTTGAGGGTCCATAGCTGGATTGTATAGGTTTCACTAGGGGCCGATACACCTCTTGCCCTGGCTTGGCCAGAGATTGGTAGCAAGGCTGCTGCATTTGCCTAGAAGGTTGACCACTGGGCTTAAATACAGAACCATAACTGGATGGTCCAGGCTTGGCAAGAGGCAAGCAGCTTGGTTGTACCTTTGGATCAAGAGGCTGTCGGCTTGGAAGCACTGGAGGCTGGTAGCTAGGCTGTTCAGGCAGCTGAGCTGGTCTGAAAACAGACTGGAGTGTGGATTGCAGTGGTCTGGGAGGGACTTGGTGGCTGGGTTGCACCATAGACTCATAGGTAGGCTGCCCAGTCCTCACTGGGGCCTGGTAACTGGCCTGAACAAGAGACTCTATACGTTGAGCCAAGGATGGAGAACTAGGTCTGGATGGAGGCTGATACCTAGTCTGTCCTGGTTGGGCTGCAAGCTGGTAACTGGGCTGCGATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU497685 True 1687 TUCP 0.49 3 5361643 5383763

Neighbor

gene id symbol gene type direction distance location
CI01000306_05250669_05357112 ARHGEF10L, ARHGEF10LA coding downstream 4531 5250669 ~ 5357112 (-)
CI01000306_05007257_05008896 NA coding downstream 352747 5006631 ~ 5008896 (-)
CI01000306_04883506_04908414 NA coding downstream 452123 4883403 ~ 4909520 (-)
CI01000306_04870702_04872912 KLHDC7A coding downstream 488706 4870528 ~ 4872937 (-)
CI01000306_04848327_04856522 DHRS3B, DHRS3, DHRS3A coding downstream 505121 4848327 ~ 4856522 (-)
CI01000306_05414347_05434965 CHD5 coding upstream 30508 5414271 ~ 5434965 (-)
CI01000306_05452986_05453456 RPL22 coding upstream 69101 5452864 ~ 5453456 (-)
CI01000306_05476895_05478400 NR0B1 coding upstream 92633 5476396 ~ 5478565 (-)
CI01000306_05506906_05508492 NA coding upstream 122901 5506132 ~ 5508657 (-)
CI01000306_05520026_05523437 PLEKHA3 coding upstream 136229 5519992 ~ 5523437 (-)
G433487 NA non-coding downstream 39372 5322024 ~ 5322271 (-)
G433486 NA non-coding downstream 41364 5319625 ~ 5320279 (-)
G433485 NA non-coding downstream 42387 5318987 ~ 5319256 (-)
G433482 NA non-coding downstream 44570 5316857 ~ 5317073 (-)
G433481 NA non-coding downstream 46300 5314817 ~ 5315343 (-)
G433504 NA non-coding upstream 77770 5461533 ~ 5461751 (-)
G433532 NA non-coding upstream 91358 5475121 ~ 5475405 (-)
G433536 NA non-coding upstream 107172 5490935 ~ 5491156 (-)
G433539 NA non-coding upstream 114211 5497974 ~ 5498184 (-)
G433541 NA non-coding upstream 115578 5499341 ~ 5499574 (-)
CI01000306_04544349_04545034 NA other downstream 816551 4542723 ~ 4545244 (-)
G432022 NA other downstream 2357752 3000236 ~ 3003891 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 3612693 1717933 ~ 1726043 (-)
G431814 NA other downstream 4049209 1311702 ~ 1312434 (-)
G431706 NA other downstream 4198305 1163027 ~ 1163338 (-)
G433670 NA other upstream 657251 6041014 ~ 6041283 (-)
G433985 NA other upstream 812344 6196107 ~ 6197210 (-)
G434016 NA other upstream 971417 6355180 ~ 6361643 (-)
G434086 NA other upstream 1053643 6437406 ~ 6452251 (-)
G434338 NA other upstream 1482893 6866656 ~ 6866936 (-)

Expression


Co-expression Network