Gene
RNA
| Item | Value |
|---|---|
| gene id | G433541 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 5499341 ~ 5499574 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU497779 | True | 234 | lncRNA | 0.33 | 1 | 5499341 | 5499574 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_05476895_05478400 | NR0B1 | coding | downstream | 20776 | 5476396 ~ 5478565 (-) |
| CI01000306_05452986_05453456 | RPL22 | coding | downstream | 45885 | 5452864 ~ 5453456 (-) |
| CI01000306_05414347_05434965 | CHD5 | coding | downstream | 64376 | 5414271 ~ 5434965 (-) |
| CI01000306_05250669_05357112 | ARHGEF10L, ARHGEF10LA | coding | downstream | 142229 | 5250669 ~ 5357112 (-) |
| CI01000306_05007257_05008896 | NA | coding | downstream | 490445 | 5006631 ~ 5008896 (-) |
| CI01000306_05506906_05508492 | NA | coding | upstream | 7090 | 5506132 ~ 5508657 (-) |
| CI01000306_05520026_05523437 | PLEKHA3 | coding | upstream | 20418 | 5519992 ~ 5523437 (-) |
| CI01000306_05544881_05552941 | CYBB, GP91PHOX | coding | upstream | 44938 | 5544512 ~ 5552941 (-) |
| CI01000306_05555926_05562924 | XK | coding | upstream | 56352 | 5555926 ~ 5562949 (-) |
| CI01000306_05606914_05611346 | FIGF, VEGFD | coding | upstream | 107031 | 5606605 ~ 5611346 (-) |
| G433539 | NA | non-coding | downstream | 1157 | 5497974 ~ 5498184 (-) |
| G433536 | NA | non-coding | downstream | 8185 | 5490935 ~ 5491156 (-) |
| G433532 | NA | non-coding | downstream | 23936 | 5475121 ~ 5475405 (-) |
| G433504 | NA | non-coding | downstream | 37590 | 5461533 ~ 5461751 (-) |
| G433487 | NA | non-coding | downstream | 177070 | 5322024 ~ 5322271 (-) |
| G433527 | NA | non-coding | upstream | 18256 | 5517830 ~ 5518379 (-) |
| G433550 | NA | non-coding | upstream | 25594 | 5525168 ~ 5526352 (-) |
| G433518 | NA | non-coding | upstream | 63844 | 5563418 ~ 5563669 (-) |
| G433561 | NA | non-coding | upstream | 68341 | 5567915 ~ 5590563 (-) |
| G433450 | NA | other | downstream | 115578 | 5361643 ~ 5383763 (-) |
| CI01000306_04544349_04545034 | NA | other | downstream | 954249 | 4542723 ~ 4545244 (-) |
| G432022 | NA | other | downstream | 2495450 | 3000236 ~ 3003891 (-) |
| CI01000306_01723684_01726043 | MAFGA, MAFGB, MAFG | other | downstream | 3750391 | 1717933 ~ 1726043 (-) |
| G431814 | NA | other | downstream | 4186907 | 1311702 ~ 1312434 (-) |
| G433670 | NA | other | upstream | 541440 | 6041014 ~ 6041283 (-) |
| G433985 | NA | other | upstream | 696533 | 6196107 ~ 6197210 (-) |
| G434016 | NA | other | upstream | 855606 | 6355180 ~ 6361643 (-) |
| G434086 | NA | other | upstream | 937832 | 6437406 ~ 6452251 (-) |
| G434338 | NA | other | upstream | 1367082 | 6866656 ~ 6866936 (-) |
