XLOC_012817


Basic Information

Item Value
gene id XLOC_012817
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 25492411 ~ 25496611 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026902
cagctgagaacaaataatagatttaaaagaccaaaaactGGCCGTTAGATatacacaaaatgtattaaatatcgtGTTTTAACTACAAGAGGGAGATTGAATCCAGCGGCAGATGCGAGATTGACTGGCCGAAGTAAAAGCTGCTGTCGGCGGGGGAGAGAATCATAAAGCTCCCGCTGACAGAGTCCGCTTTCACTGAAGCACATTGTCAAAGAAGCActgtctttttaaataaactgccgattcgagtttaaaacaactacattctcgcctgaaatactcttaaaactacattttgtgaaacattagatgatattttttttaaacttgcggGTCTGCACAGCGGGGTATTGTCCATTGACTTTCACTTAGCATTAGCAGCCAGCAAATTTGAATTCGTGTTGTCCAATAGGATTTTTGCCCGCGCCGTGCATTCATAATGCCAGCTGATTACGTGTGACGGTTAATCTCCAGCTGTTGCACTGTTGTTCTGACGCTCTTCTCGGCGTCGATGGAGGATGGACCTGAAGGACGCAAAGAAGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGaaaaTGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTAAGTATTTAGTATTTTGTATTTCATCtgtttgttaatatatatatatatatatatatatatatatatatatat
>TCONS_00026903
gtttaaaacaactacattctcgcctgaaatactcttaaaactacattttgtgaaacattagatgatattttttttaaacttgcggGTCTGCACAGCGGGGTATTGTCCATTGACTTTCACTTAGCATTAGCAGCCAGCAAATTTGAATTCGTGTTGTCCAATAGGATTTTTGCCCGCGCCGTGCATTCATAATGCCAGCTGATTACGTGTGACGGTTAATCTCCAGCTGTTGCACTGTTGTTCTGACGCTCTTCTCGGCGTCGATGGAGGATGGACCTGAAGGACGCAAAGAAGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGaaaaTGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTGATTGCTGCAATTGGTGAGGATGCATCATCTTTTGAGAGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGtcaTGGTGAACCTGACTGAATGCATTCATCTACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAAGAGAATAGAAGTTTGCAGATGATCTAACAGggtgtcacagtggcgcagtgggtagcatgatcgcctcacatcaagaaggttgctggtttgagactcggctgggtcagttggcatttctgtgtggagtttgcatgttgtccccatgttggtgtgggtttcctccgggtgctccggtttcctcgacaagtccaaagacatgcagtacagatgaattggTGGGATGATAATGATGCTCCATACTCAACTCTACAGATAGCTGAAAGTCCGTTTTAAAGGCATTATTACATCCTTCGCTGTTTACTGTGTTTTCAACTTTGCTTATCCACActacataaagaatgcaaaggATGAACATCAGCAACTCCCCAAGATGGAACAACAATTTAAATTTGAACATCAGCAACGGTGTGAAGATGGAAATCCAAAATTACAAGAAAAATCAGTGCAGCTGTCCAAGAGCACTGGTATTGCTGGGTCTGCATCAAACAGCAATGCTTGGATCTTTGCATTTACTTTGGTGCATGCGTTTCGAGTCTGTGCATCAGTAATTTAAGACTAGCAGCTATAGACATTTCAATAACATTGCCCAAATCAACTGAGAAGCACAAGATGAAACAATGCTTAGAATTTTCTCCGCCCAACATCCTTGATGAGATTGACACATTCAGGTGTTCAAATTGAACTGTTTTCGTGTGCATGTGAGACCGCTAATGGAGAAGAAATGACACTTTcctaatgaaatacattttaaatgtcaatactGCACTGGTTTCTGTGTAGCAAGTTTTTAATTCTGCTGTTGTATGATTCATATTTCCATGCAAATACAGTAAGAGTTTGACTTTGAATGGGGTGTTATAAACCAAGACAGACGGACTTTCAGGCTCTTGAAACATACTCTGCTGATAAActgtttaagaatgtttagaaattTCAAATCAAATGTGTAAAACTTTGATCAAAAGtgtttttgagatctaaaatgaTTATGGGTATACTTTAAGTGACATGTTTCAATGTACTGTATGGAAAAAGATTGCTTTGAGATTCTTGATGCTTTTAGAAAATGTAGAATGCAGTGCACTAGCACAAATGTACTTTATTAGGTCTACTGTTGTTTTAGAAAAATTACTTTGTTACATTGGTAAAAATGCTCAGTAAAATGGGATGCactgatgttaaaaaaaataatattaagtttttttgctgtttcataaaatgttttaaaatgtttaagcagcTATTTCTTAAGTTTATGCATCTGGTATGACTTTGTGATAGTTTAAAACTTTCATCTTCTAAAAAGGTGACAATGTAATTGTTTTGAATCTTtcaatgtgtgtttgtgataaaatgttacattttaatgtcttttaaaatgatgtaatgtttaaacattcATCCTGTAAAAATTttgatatttaatatgtttaataaatgtgataaATGAAATTTATTGTGTA
>TCONS_00027118
taaacttgcggGTCTGCACAGCGGGGTATTGTCCATTGACTTTCACTTAGCATTAGCAGCCAGCAAATTTGAATTCGTGTTGTCCAATAGGATTTTTGCCCGCGCCGTGCATTCATAATGCCAGCTGATTACGTGTGACGGTTAATCTCCAGCTGTTGCACTGTTGTTCTGACGCTCTTCTCGGCGTCGATGGAGGATGGACCTGAAGGACGCAAAGAAGCTGGAATACGCTCGTGAAGACGAAGCACAGACATTTGCAGGTaagtttaatgttaaataacGTATTGTAAATATCCGTTGGGTCATATTCAATTCATATTTGACGTTACTTTGCCTTGTGTACGTAGTTAAGATTAACGTTACCGTCGAGTTACCTGCCGCGTGAGGGGACCCTTTTGTAATTTAAGGTTGACcagaaattaaaatatgattttttacatAACCTGGCCATGAGACAGAGCTCGAGACGCTGACAAAACAGCGGTGAAACGTCCAGAGAAACAGTTCAAACACATTTAAGTTAGTTTTGTTTGGATAATGTGGTTAAGTCTTTATTGCATACGTTATTTATAAACTCAGAATTTCCTTAGTGTTGGGAAGCTAACATTCATGCTAACGTTCATGTTTATTTCTTAAAGGAGTGAAGTGAATGCCTTCATGTCTGAAACAATGTAACTTTAACGTTAGTTTATGCATATCTCGACCCACGTCAATTTATAGCAGTTGTATTTTGCAacgttacatatttaaataacgtTATAAATGCATGTCCAAGAGAGTCATAATCATCTGTCGTGTCAGATCGAGGTGCGGGTCATTTATCAAACCTTTGAGTTgctaatttaaagcttttttttttttttttttgctgttaaccTCAAGTTCACACCGatcataattctttttgtttcagaaaaTGAAGTGGACGAGGAAGCAGTAGAGTGTAATAACGTAAGTATTTAGTATTTTGTATTTCATCtgtttgttaatatatatatatatatatatatatatatatatatatatatattattttttttttatatatatatttatatattatgtatgtgtgtgtgtgtatactttttCCCCAGGAATTCATTGTGCAGTCTTAAATTTAATCTCTTTTCTTCTATTCAACTGTTCAACTGTTAGGTGAAGTGTTAAAGTTATATTTGAATTTTTATGATTGTCATTATTTTGCACTTATATTTGATCCAATAGGTGATTGCTGCAATTGGTGAGGATGCATCATCTTTTGAGAGTAATGCGAATGTCCTGCGTATCCAGTGAAATAAGGTGTGTGACCCTTTATTAAAAACACCCTTGTCAGTGAGAtcacacattttaaatcagttctcagtttaaatgaaaagtttaatGTCAGTAATATCTAAAGTGTAGGATCAAAtgactattataaatgttatgactattgtaaaaaaaataatttttaagcttTGTAATGAACATATGTGCATTCAAGCTTACAACTATTTGTACAATGATAATTTAAGGGAAATGGCAACAAAGAATATTAGATAATGTTTTTAGTTAAAGTGAATCACTAATttcctttttgtttattatagtcaTGGTGAACCTGACTGAATGCATTCATCTACCATCTCCAACCAAGTCAGAGCTTCAAGGACAGCTTGTGCTAAAGGTGCCTGAGCTTGATTAAGAAAAAAAGCATCTCCACTGGCCAAAGTCTACAAAAAAGCAAGAGAATAGAAGTTTGCAGATGATCTAACAGGTATTAACATAAAACTTACGTAATAATAATTTTGCTAGATCAAACCTTTATTTCTTGGATGTGATCATTAAGTGCCTTTTCAAGCTGCATTTAGCAAGTTCATACTCATTGGCCTTATATACAAACCCTTTGTATAcagaacattttctttaaaaaatgtaattcataaaaatacatCAATATCTTTTATTCAGCATTTGCTAAACATTCcaataattttttctttattttaaaaacaggtcctttatattattaaattatttaagagtacttcattatttgtctttattttattttagggtgtcacagtggcgcagtgggtagcatgatcgcctcacatcaagaaggttgctggtttgagactcgg

Function

GO:

id name namespace
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0001706 endoderm formation biological_process
GO:0048731 system development biological_process
GO:0001707 mesoderm formation biological_process
GO:0001708 cell fate specification biological_process
GO:0045995 regulation of embryonic development biological_process
GO:0001711 endodermal cell fate commitment biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0001714 endodermal cell fate specification biological_process
GO:0022603 regulation of anatomical structure morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0007498 mesoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0010646 regulation of cell communication biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0048513 animal organ development biological_process
GO:0003154 BMP signaling pathway involved in determination of left/right symmetry biological_process
GO:0035295 tube development biological_process
GO:0045165 cell fate commitment biological_process
GO:0009888 tissue development biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0090092 regulation of transmembrane receptor protein serine/threonine kinase signaling pathway biological_process
GO:1903224 regulation of endodermal cell differentiation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0010453 regulation of cell fate commitment biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010470 regulation of gastrulation biological_process
GO:2000027 regulation of animal organ morphogenesis biological_process
GO:0023051 regulation of signaling biological_process
GO:0009966 regulation of signal transduction biological_process
GO:0048332 mesoderm morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:1900094 regulation of transcription from RNA polymerase II promoter involved in determination of left/right symmetry biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0061312 BMP signaling pathway involved in heart development biological_process
GO:0060795 cell fate commitment involved in formation of primary germ layer biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0003303 BMP signaling pathway involved in heart jogging biological_process
GO:0035987 endodermal cell differentiation biological_process
GO:0042659 regulation of cell fate specification biological_process
GO:0072045 convergent extension involved in nephron morphogenesis biological_process
GO:0042663 regulation of endodermal cell fate specification biological_process
GO:1901213 regulation of transcription from RNA polymerase II promoter involved in heart development biological_process
GO:0009790 embryo development biological_process
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026902 False 695 lncRNA 0.39 2 25492411 25493758
TCONS_00026903 False 2047 lncRNA 0.37 6 25492659 25496611
TCONS_00027118 True 2126 lncRNA 0.33 1 25492733 25494858

Neighbor

gene id symbol gene type direction distance location
XLOC_012815 si:dkeyp-59c12.1 coding upstream 265707 25225524 ~ 25226704 (+)
XLOC_012814 fam174b coding upstream 482745 25003207 ~ 25009666 (+)
XLOC_012813 rgma coding upstream 560082 24919614 ~ 24932329 (+)
XLOC_012812 AL935295.1 coding upstream 751690 24737234 ~ 24740721 (+)
XLOC_012811 CT030043.1 coding upstream 849309 24642987 ~ 24643102 (+)
XLOC_012818 pex11a coding downstream 49616 25546227 ~ 25550960 (+)
XLOC_012819 fkbp16 coding downstream 156988 25653599 ~ 25745636 (+)
XLOC_012820 si:ch211-39k3.2 coding downstream 255981 25752592 ~ 25754918 (+)
XLOC_012821 znf710a coding downstream 551517 26048128 ~ 26094678 (+)
XLOC_012822 RASGRF1 coding downstream 841258 26337869 ~ 26418637 (+)
XLOC_012809 CR847971.1 non-coding upstream 1009126 24477526 ~ 24483285 (+)
XLOC_012808 NA non-coding upstream 1603369 23876440 ~ 23889042 (+)
XLOC_012807 NA non-coding upstream 1664353 23811384 ~ 23828058 (+)
XLOC_012825 NA non-coding downstream 960070 26456681 ~ 26461427 (+)
XLOC_012828 AL935332.1 non-coding downstream 1251200 26747811 ~ 26747927 (+)
XLOC_012832 NA non-coding downstream 1500965 26997576 ~ 26998589 (+)
XLOC_012835 BX640463.2 non-coding downstream 1699599 27196210 ~ 27196326 (+)
XLOC_012841 BX649600.1 non-coding downstream 2240113 27736724 ~ 27736840 (+)

Expression


Co-expression Network