G432958


Basic Information

Item Value
gene id G432958
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5658928 ~ 5660169 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU497140
AGGAGAACTGTGGCACGAAAAAGATAAAAGTGAGATTCAGCCTGTCGTTTATAAGTGAGGATGATTTGGAGATGGAGGGGCACCAGGAACTGCCAAATTCACAACCAGAGTTGAAAGACGAGGACATTGAGGACGATTGTTTCTATGATGACAATGAGATGCTCGTTTCCCTGGCAAACATGAGCTTCAATCTGGTTGTTGACCAAGACCACAACACTGACGAACCTCTCTACAGCTGTGATCACCAATTTAATGAAATTGTGGTCATGCCTGAGCAAGCTGATTTTGCCTTTATTTCTGCAGTTGGGAGAATGATTAAAGAACATGACAATTTGTTCTTGAAGTCACACCAAAAATGCAAGTACATCACATCTGAACGGAATCAGATACATTTGGCGGACACTATGTCAGCAAAAATCACCATCTTCCAATGCATGGCAACCAAAGACACAGAACCAGGTGTTCCTGTTGTGCTGAACTTCACTGACACTGATAAATTCTTCTGCTGCACCAACGAAGGAGGACAAATTAATTTAAAAGTTACAAGGTATGACAAAACAAAGCTACACACCTCCGGAGATGATGAAGAAAAATTAGCCCATGTTTTCTACATGTCTCGAACCCCGGACGGTCTCCGGCATTTTGAGTCAGCGCTCCACAGAGGATGGTTCATTCACACTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU497140 True 746 TUCP 0.39 4 5658928 5660169

Neighbor

gene id symbol gene type direction distance location
CI01000306_05650597_05655729 NA coding upstream 2975 5650597 ~ 5655953 (+)
CI01000306_05617258_05617548 NA coding upstream 40838 5617258 ~ 5618090 (+)
CI01000306_05581415_05587605 GRPR coding upstream 71267 5581268 ~ 5587661 (+)
CI01000306_05568573_05569674 NA coding upstream 88940 5568371 ~ 5569988 (+)
CI01000306_05525004_05533724 RPGRB coding upstream 125204 5525004 ~ 5533724 (+)
CI01000306_05680240_05680527 NA coding downstream 19577 5679746 ~ 5681035 (+)
CI01000306_05740500_05745336 NHSB, NHS coding downstream 80152 5740321 ~ 5745473 (+)
CI01000306_05755968_05757253 NA coding downstream 95610 5755779 ~ 5757390 (+)
CI01000306_05805669_05822854 CDKL5 coding downstream 145500 5805669 ~ 5823408 (+)
CI01000306_05826877_05830536 RS1, RS1A coding downstream 165912 5826081 ~ 5831069 (+)
G433070 NA non-coding upstream 84855 5573601 ~ 5574073 (+)
G433066 NA non-coding upstream 93690 5565027 ~ 5565238 (+)
G433065 NA non-coding upstream 95256 5563418 ~ 5563672 (+)
G432970 NA non-coding upstream 136005 5522161 ~ 5522923 (+)
G433064 NA non-coding upstream 153774 5504912 ~ 5505154 (+)
G432947 NA non-coding downstream 4746 5664915 ~ 5673295 (+)
G432991 NA non-coding downstream 225031 5885200 ~ 5887156 (+)
G433120 NA non-coding downstream 230792 5890961 ~ 5891184 (+)
G432961 NA non-coding downstream 231691 5891860 ~ 5892292 (+)
G432678 NA other upstream 1136392 4522182 ~ 4522536 (+)
G432583 NA other upstream 1331106 4326402 ~ 4327822 (+)
CI01000306_03807268_03810946 NA other upstream 1849930 3807268 ~ 3811243 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other upstream 1875909 3778052 ~ 3783019 (+)
CI01000306_03772689_03777211 DYNLRB1 other upstream 1881378 3772689 ~ 3777550 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other downstream 320344 5975822 ~ 5986288 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other downstream 445974 6106143 ~ 6108175 (+)
G433724 NA other downstream 448442 6108611 ~ 6129778 (+)
G434545 NA other downstream 1459148 7119317 ~ 7119859 (+)
CI01000306_09225597_09230504 NA other downstream 3565396 9225512 ~ 9231333 (+)

Expression


Co-expression Network