G432947


Basic Information

Item Value
gene id G432947
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5664915 ~ 5673295 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU497129
TTCAATGTCTTGCTCAAAGGCTTTGTTCACTTCTCCTTCAACTGAATTCTCATATGGGTTCACAGTCTCCTCAACCTTCTTAGCTTTCCTGGGGGGGAAAAAAATGGAAATATAATAATTCAGTCACTCAGCTAACAAAAATATGTAAGAATATTTTGCTAACATTCAAATTAAGTTGTGAAAACATTATTTCTGAATGTTTTCGGAACGTTCAATATGTTCAGTTTCTTAAATGTTTTTAAAACTATTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTAACAATTTGAGAACATTATAAAAGACCAGATAACTATAAATAATGTTTTAAAGCCCACATTTTACTATTCAGAAATGAATTATTATAATGTGCAACATTTCTAACCTGGATGCTAAAAAATAAAGTGTTACTTATTACTGTATTGCACCAGACCAGGATGTTGGATCATGTCATGACAATAAGGATTGCATCAATCACTGTCACTAAACTGGTTCTAAGCCACTTTTATGACTGACTCATTCTTGAAGGGCTTCCCCTCCAGTACTTACTTCTTCCTGTTTAATATCCCTGTGGTAATGAGGTAGATCCCCCCTAACACAGTTACTCCCATTACCACTCCAAACACCACCAGCCAAACTGTGATTTTTTCCTCTTTGGGTGGAGCTAATGTTGCCTGCAGCCCAACAAATTCCAGTGTTTCATCATTGAGCAGAAATGCACCGTTGATACGTTCTCTTGACAGCCTATAGCTGCCTCTACTTCGGCCTTAGGAATAACTGTGTCTGATTTGGTTGGATCCATCACAACAAAATAAAAGGAGATTCTGGCAGTTTCACTGTACGTGTGGATGTTCTCTGGCCTGTGAGCAACAAAAATGTTAATTTTACGATGAAAAAGATTCAGTCTCATTACTCTGACATGTGCAATTAGTGAAGGATAAGAATACTTACATGAAATTCATTTCTATTCCCTTTACTTCCAAGTAGTACTGGCGCATGGCAAAGCTCATAGTGGACTTAAAGAGATACATTTCATTTGTATTCCAGGTGTACTGGAGATCAGAATGAACAATAATTAGCAAATGCACATTCTTTTTGTATCTGTAATTAATTATGTTTGTTAAATATTAAAAGAGACTTACTGCATCATCTCCCATGGCAGATTTTAGGCTTATTCTGACTTTGAAGGCATTTTCTGAATCTGCATTATTTATATAGGAAGCTGTGAGTATAAAAGTATGCCCAAGGAAAAAATTTTCAACACACAGCTTGTGGCATATCAATACTGGAACATTATTTGGTCTGTATTGACGGTTGAAGGTAATATAATTTAACCATAGATTTAAAAAAAAAAAAAAAAAACGTACAGAAATGTAACCATCTGCTGTGAAAAAATAAGTACACCCCTACATTTAGTAGTTGGTATTGCTTTTTGTTCTTACATTAACTAAGAGGAAATTTACTTTTCGTAAAAGCACAGGCTGTAAAAGAAAAGTAATGGAAAAGTAATGTCTATGTTAAAACAAAATACTAACTTGGGTTAATATTGACGTTCCAGCCGGGCACTCTGTTGTTCTTCTGGTTCTCCTCCTTCAGCCAATCCATGAGAGTGCTGAAGTAATGTAGCAGTGGCTGGGAGTCCATCTTCGTGGTTCCTGCAACATCTTCCAGAGCACGAGTCCAAGACATGGATCGGCCTAACTCGAGCATATGCCTGGTTTGTTACCAGCTTTGGTTGAGTTGGTAATGTCACATTTGTGAAGGGGACCGGTGTGGCCAGCTGCCTCACATAATGCCTCTTGAAACTGGAACTGATATATGGTTCTAGTAAAGTACCTATTAGAGAAACAAGACATGGCTATTAGCCTATATATCCATAGATTTAGCCTATATTGTACTGCATAAAGAAAGACTAATAATAATTCTGGCAATACAAAATTATTACAGATACAGATTTCCCAATTCATTCCAGATTCACAAGCTCTCAGTTTGATTCAGAGTCATTGTGGTAGGCTATGTCTTAGTTATAATGTTATAGTGTTACAGTTATAGTGTTGGGTTATTACTTTTCCCTAGAAAAAGTAAAGGGTTTAATTTAATTACAGTTACTTCTGATGTAATTGCATACTGCATAGACTATAGAACAATGCTATATGTGACCCTGGACCACAAAACCTGTCATAAGTTGCACGGGTATATTTGAAGCAATAGCCAATAATACATCGTATGGGTCAAAATTATCGATTTTTTTTATTTTTTTTATGCCAAAAATCATTAGGATATTAAGTAAAGACCATGTTCCATAAGGATATTTTGTAAATTTCCTACTGTAAATATATCAAAAATGTATTTTTGTGAGTGGATATGCATTGCTAAGGACTTCATTTGGACAACTTTAAAGGCAATTTTCTCAATATTTTGATTTTTTTTGCACCCTCAGATTCCAGATTTTCAAAGACTTTCAGATGATGCATAAATCTCAATTTCAAAAAATTGACCCTTATGACTGGTTTTGTGGTCCAGGGTCACATATAAAACAATAGTGGATTTAACATCAAAATTTAAATACTTTGGTCAATTCAAGAATAATTTGTGCAATTTTTATATAATTTGTTTGACAGAATTAAAAGAGCAGTTTCATGTCTATCCTTGTATTGTTGAACTGATCGAGGTATATGATGATTTTAGAAAGTAACTAGTAATAAATACTTTTTAGAGAGAGTAATTAGTACAGTTATCTAATTAGACTGTTGAGGATGTCATTAGTACCTAGAAATTAATTACTTTTTTAGAATAACTTGGTCACGCCTCAAGCGGCATGTTTTGATTCGCTAGAAAGAACCGGCTCAAAAAAGTCATTTGTTTCATGAATCAGGCTACATTGGTCGTGCGACATGTTTTGATTCACTACAAAGAACCGGCTCAAAAGAATCATTTGTTTCAGGAATCAGGCTACATTCATTGGTCGTGCGACATGCTTTGATTCACTAAAAAAGAACCAGTTTAAAAGAGTAATTTGTTTCGGGAATACTTCATATGCTATGTATGTTTCTATTCACTAAAAGAACTGGCTCGTTTCATTTGTTCATGAATTGGACTACAGAGGTCGCGTTGTATGTTTGTTTGTTTATCAAAGAACGTTTCTTGCTATTTTTTTATAACGGTATTTTTTTTATTGCTTAACATTCACAGCTAATGTGAAATATGAACCGTTTTAAGACTCAATATCGGGATAGTTCAAATAAAAACCGTGACTTATGTAGCGGTAAAGACCGTCAGGACTTTGTCAAATGCATCACTTTATTAATACTACAGATTGCATTACCTGATAAAAGAGTAATCCCCAGACACATGGAAAAGGGCAGGTGGGTCACAATATGACTCATCTCTGGGCACAGCCTCAGCCACTCCAACTAGTTCTCTCCTGTGGTAACAAATGCTGTGATGAGCCACACAGTGCAACTGAATAAAACTGTGTTTGGATTCTGATGTATGTTTCCTTTGTCACTCACTTCATTTGCCACCAGCGAAGCATCCACTCATCTTTGGGGATGGTCTCTTTGAAGACTTGCCACCTCCATTCCTCCAGCATGTAGGTGAAGGGCAGAGTGGCCACGATGGTGAGGGCCTGCTTCAACAGGAAGTTAATCTCTGTCTCTGTACATACAAGAAAAAGAGTTTTGGTAAAGAATGATCTGCTAAAATCCATTTATGTTAAATTAGATGAAGTCAGACGAGTCATGCATGCAATGGCATTTTACCATCGTCCTCCTTGAAATCAGAAGGCAGAAGGCCCAATGACTGCAGGTGAGAAGGAGTGGCAGCAGAAAGTGACATGATCTCTCCCACGGCCTCATGGAAACCTTCGTTTGCACCATCTCTCAGCAGGTATGAGTGGTGACGGTAAGCCATTTGGTACTGGTTATGTCCCATCTCATGGTGAACAGTTAAGAAATCATCCATGTTCACTTTAGTGCACATTTTGATTCTGTACTGTCTGTTTCCCATGTCCCATGCGGTAGGATGGCACACCACATCTCTTCCTTCAGGTTTAATGAACATCGAGTTTGTCCAGAAGTTGTCAAACATTGCAGACATGTTTACAGACATAAAGAAATTTTCTGCCTCTTTAAACAGGCGCATTTCATCCCATCCCTGAAATAGACAGTGGTGTCAAATAATTAGGAAAATAAAAATAGCATGACCACATTTTGACAATTTACAACTCCATAATCTTTAGGGATGCTTTTATTGCTCCAGCTAAGGAACAAAATGATTAATAGAATAGATTACATTTAATCTTTGATCAAATAAAATATGAACAGACCTTGTACTGTTAAACATATGAAGATAAAAGATAAAACCTTGGAGATAAAGAGACGCTCAACTCAGAGCAAAAGGGTAAAGTATAGAAATAAACAATGGTCACGTCATACCTGGGCCACCATTGCAGAGCTCACATCGATATCAGGCTTTTCTGGGTACGGGATCATGAGAGGATACAGGTTGGTCCAAAACCGTCCCCACATATCACCTGAATGCAAAATGTCAGAAAATATTACACTTATCTCCACATTTCATCATAGACCGGCCTATATCCTAATTGCAAATATTTATTCTATTATCTGCCATTAAATATCACTATTTTGACAATGTGAATCACTTAATAATATTCCATATATTACCAAGCAGATGTGCTGGAAGGCAAGCGTCGGAAGCGATGTGACCAGGATAGAGACCTTGCAGGTTTGCTCTCACATAAGCATGAAGCTCTTTATACAATGGCAAGATCTGGAACATCATATTAAGTGTGAGTTTCTGACTGATAATAAAAGTGACTGTCTTGTGACTCTTCTGACTTTTTTTGACGAACCTCTTGGTAAATGCGCCTGGCGTCTTCCATAACTTGGTCTCGGGAGTAAGTGTATTCAGGGTCATCGATGGTTTCGTAATCGTTGAGTTTGGCGGCTTCGTTCTTCAGATCGACATATCTCTCATACAGGGGTCTCATCTTCATCCCTGTCGCCACTCTCCAGCCCTCCCACACATGCAGACGCTCATCGTAGTCTCTGCTGTTTGCCATGATGCTCTCTAGACCTATACCTGGCTCCAAAGTCTGACAGTCAGAGGGGTTGTCCATTTTGCAAACAGTTGCTGTGTTGTAAATAGTGCTCATCTCTGACATGATATTCCTCAGCTGTGATACACAAGGCATTCGGACCATTTTAATACGTTTGCAGGAGAAGTGAAACATATGAAAGTGAATTTCAATGTCTGGGTGACGTTATTGTCAAACAGCAATGATATACTTACTTCGCTAGCCTTGTCAGCTGAAAGTGCCCCTGATCCTTTATCTTGGAGCTTTTGGAGCTGTATTTTAATCTCTGGATCAGAGATCTGATCGATAGGGTAGGCACTGGACTCCTCAGACATCTTATTGTAGAATTCGCTCCAGATTGCATATGCTTCAGCCTGAAGAGAAGTTTAAAGAGAACTCATAATAAAACACTCAATTTGTGATTTCAGTAGCTGAAGGGGTTAAAAACCATCTGTAGAAGATAGAAAGAGATGCTCAACTTGTCATGAACACCCATATCCAGTTCAATTAATGTTTTCCCTAAAAATGAGATAATTTATGATTTCAGTAGTTGATTGGGTTAAAAACTCTCTGCAAAAGTTAGAGATGCTCAACTTGTCATGAACACCCATATCCAGTTACTACTAATGTTGTTCTATTAATATTTTCACCAACAATGAGATAATTTGTGATTTCAGTAACTGAACAATTAAAAACTGTCTGTAGAAGGTAGAAAAAGATAATCAACTTGTCATATCCAGTTACTATACTGACGTTGTTCAATTAATATTTTCCCCAAAAATGAGATAATTTGTCATTTCAATAGCTGAATGGGTTAAACCAACAATGAGATCATTTGAGATTTCAATAACTGAACGAGTTAAAAACTGTCTGCAGAAGATAGAAAAAGATGATCAACTTGTCATATCCGGTTACTACTGATGTTGTTCAATTAATATTTTCCTTAAAAATTTGATAATTTGTAATTTCAGTAGCTGAAGGGGTTAAAAAACTGTCTGCATAAGATAGAAAGAGATGCTCAACCTGTCATGAACACCCATATCCAGTTTCTACTGATGTTGTTCAAATAATATTTCCCCTAAAAATTAGATATTTTTGTCATTTCAATAGTTGAACTGGTTAAAAAAGTTCTGCAAAAGCTAGAAAAAGATGCTTAACTTGTCACAAACACCCATATCCAGGTGATACTGATTGTTCAATATTTTCCCCAAAAATGAGATGCTCAACTTGTCTATTTATATCACACCTACCTCTTTATCTGCATTTTCCTGGGAAATATCTGTGTTGTAGGCCCAGGATGCAAGGGTATACTGGTACACAAGATCGGATGCGTCCTCATCAAATTTCTTCAAGAATTCCCTGGCATTTTCCTCCACAGTCTGACAGCAGACCACAGAGGCCATGGCCAAAAGCAGGAGCCACCGAGCACACATCATGACAGCGCGTGTCCCACCAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU497129 True 6561 lncRNA 0.37 6 5664915 5673295

Neighbor

gene id symbol gene type direction distance location
CI01000306_05650597_05655729 NA coding upstream 8962 5650597 ~ 5655953 (+)
CI01000306_05617258_05617548 NA coding upstream 46825 5617258 ~ 5618090 (+)
CI01000306_05581415_05587605 GRPR coding upstream 77254 5581268 ~ 5587661 (+)
CI01000306_05568573_05569674 NA coding upstream 94927 5568371 ~ 5569988 (+)
CI01000306_05525004_05533724 RPGRB coding upstream 131191 5525004 ~ 5533724 (+)
CI01000306_05680240_05680527 NA coding downstream 6451 5679746 ~ 5681035 (+)
CI01000306_05740500_05745336 NHSB, NHS coding downstream 67026 5740321 ~ 5745473 (+)
CI01000306_05755968_05757253 NA coding downstream 82484 5755779 ~ 5757390 (+)
CI01000306_05805669_05822854 CDKL5 coding downstream 132374 5805669 ~ 5823408 (+)
CI01000306_05826877_05830536 RS1, RS1A coding downstream 152786 5826081 ~ 5831069 (+)
G433070 NA non-coding upstream 90842 5573601 ~ 5574073 (+)
G433066 NA non-coding upstream 99677 5565027 ~ 5565238 (+)
G433065 NA non-coding upstream 101243 5563418 ~ 5563672 (+)
G432970 NA non-coding upstream 141992 5522161 ~ 5522923 (+)
G433064 NA non-coding upstream 159761 5504912 ~ 5505154 (+)
G432991 NA non-coding downstream 211905 5885200 ~ 5887156 (+)
G433120 NA non-coding downstream 217666 5890961 ~ 5891184 (+)
G432961 NA non-coding downstream 218565 5891860 ~ 5892292 (+)
G433123 NA non-coding downstream 233992 5907287 ~ 5909232 (+)
G432958 NA other upstream 4746 5658928 ~ 5660169 (+)
G432678 NA other upstream 1142379 4522182 ~ 4522536 (+)
G432583 NA other upstream 1337093 4326402 ~ 4327822 (+)
CI01000306_03807268_03810946 NA other upstream 1855917 3807268 ~ 3811243 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other upstream 1881896 3778052 ~ 3783019 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 other downstream 307218 5975822 ~ 5986288 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other downstream 432848 6106143 ~ 6108175 (+)
G433724 NA other downstream 435316 6108611 ~ 6129778 (+)
G434545 NA other downstream 1446022 7119317 ~ 7119859 (+)
CI01000306_09225597_09230504 NA other downstream 3552270 9225512 ~ 9231333 (+)

Expression


Co-expression Network