G433593


Basic Information

Item Value
gene id G433593
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5788815 ~ 5792231 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU497859
ATGAGCCCTGACCATTCTGTTGCACTGTACTGTCATTCATCATCTAGCCAGGCACCCAGCCACACTGCTGCTGTCTGCCCAGGCGTGAAGACACATCCTGGGCATGCAACCATGACTCAAATACCAACAGCATCGAAGACACACAGAAAAGGACTGTGAAAACAACCTTAACAGACAGGACCACCCCATAGGCTCCTTTGGGGAAAAAAAAAGGAAATGCTTTGGATGTTCAATTTACACAGTTTACGCACAAGCAGCTGCTTTATAAGCAATGACATTATTCCTCTGAATACTGAATGATATTAACAAAAGATGCACTCACCTTCTCCTACAATCCCAAGGACCTCAAATTTATTCATCACATTACCGATGTCAGGAATCTTCATCAAGTCAAAAGATGGCAAAGTGGTGCATGTCTGGGCTGAGAGGAGCGGAGGGCCAGAGGATGGGACAGAAATCGGTGTTTGAACGGGTCATTGCAGCAAAAATCTGCTCCCGGTTGGTCACAATGCTCTTCTTATAATCCACACACACACACTGACACACATTCCTGCAAACTAATACACTACACACACACACACACGCTTGCTCACCTGAGGAGGAAGAGTGCAGAGATTTTGCAGAGAAGGGGTCAAACAGAGTTATTCATGCATACTGTATCTACATCATATGTGGCATATCTAATGTATACTTCACATGAATATGCATCATATGTATGATGTGCATCAATGCAGTGGCATATCTAATGTTTACAGCATATTTCACATGCATATGTATGAAATGACACTGATTACTGCTCAAATTCTGTCTCATTTTACTGAGAATGGATATTTTTATGATTGTTATGATTCGGTTTGTCTGAGGTGATAATAAACAAGGGTCTTCAAGACGAATTCTCATGAATTTTTCTATAGTTTTGGGAATAGCAAAACGACAGCTCTGAAAGAGATTTACAGGTGGGTGAACAAGGACAGACTGAGAATCCTCTGCCAAACCAGAAGTCAGTGATGTAATGTGCTGAAAACACAGATGGACATCATCTCAATCACCTCAGATGTGCGACAGGTATCATCTGCTTTTTATTTTCGGGCAGTACCCGTTTCTTTTGCACTTAAATGCATTTCCATATGCGTTTCGAAGGTCATGTCGTGATACCGACAGCTACTTGTGTGTTTGTGCATAAAAGCGGCGCATGTCTGCATCTGATGTGTTGTGCGGTATGCGCGTGCGTAAGTGTGTGCGCGCGCTGGAAATATTCGTAGGTGGATGAAAGTTCTATCATTATTTTAAGCATCTTATCCACCTGAGAGTATCAAGAAATGACTGACAGCCCACAGCACTCACACCCACTCTTAAATGAACAGTAAAAATACGGTGAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU497859 True 1380 lncRNA 0.43 2 5788815 5792231

Neighbor

gene id symbol gene type direction distance location
CI01000306_05760131_05782175 SCML2 coding downstream 6640 5759334 ~ 5782175 (-)
CI01000306_05732360_05733779 NA coding downstream 52967 5731283 ~ 5735848 (-)
CI01000306_05664945_05673274 ACE2 coding downstream 115517 5664945 ~ 5673298 (-)
CI01000306_05631903_05640235 NA coding downstream 148580 5631733 ~ 5640235 (-)
CI01000306_05619706_05631189 PIR coding downstream 157626 5619636 ~ 5631189 (-)
CI01000306_05879886_05883498 NA coding upstream 86507 5878738 ~ 5884232 (-)
CI01000306_05888356_05890267 TMEM169A coding upstream 95838 5888069 ~ 5890366 (-)
CI01000306_05891607_05897232 PECR coding upstream 99342 5891573 ~ 5897325 (-)
CI01000306_05902120_05929983 MAP4K3A coding upstream 109567 5901798 ~ 5929983 (-)
CI01000306_05990444_06033972 NCX, SLC8A1, SLC8A1A, SLC8A1B coding upstream 197022 5989253 ~ 6033972 (-)
G433617 NA non-coding downstream 744 5787733 ~ 5788071 (-)
G433583 NA non-coding downstream 115164 5673412 ~ 5673651 (-)
G433561 NA non-coding downstream 198252 5567915 ~ 5590563 (-)
G433518 NA non-coding downstream 225146 5563418 ~ 5563669 (-)
G433550 NA non-coding downstream 262463 5525168 ~ 5526352 (-)
G433656 NA non-coding upstream 57527 5849758 ~ 5852399 (-)
G433628 NA non-coding upstream 92972 5885203 ~ 5887132 (-)
G433633 NA non-coding upstream 219428 6011659 ~ 6028057 (-)
G433940 NA non-coding upstream 259574 6051805 ~ 6054634 (-)
G433939 NA non-coding upstream 311608 6103839 ~ 6107564 (-)
G433450 NA other downstream 405052 5361643 ~ 5383763 (-)
CI01000306_04544349_04545034 NA other downstream 1243723 4542723 ~ 4545244 (-)
G432022 NA other downstream 2784924 3000236 ~ 3003891 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 4039865 1717933 ~ 1726043 (-)
G431814 NA other downstream 4476381 1311702 ~ 1312434 (-)
G433670 NA other upstream 248783 6041014 ~ 6041283 (-)
G433985 NA other upstream 403876 6196107 ~ 6197210 (-)
G434016 NA other upstream 562949 6355180 ~ 6361643 (-)
G434086 NA other upstream 645175 6437406 ~ 6452251 (-)
G434338 NA other upstream 1074425 6866656 ~ 6866936 (-)

Expression


Co-expression Network