G433656


Basic Information

Item Value
gene id G433656
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5849758 ~ 5852399 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU497938
CTCACCTCGACAGGTGCGCTGGTCCTCAAGAAGTAGAAACCCTGGTTTACAGAGACACTGGGCACGATTCTGTTCACTGACATGACAGATCTGAGAGCATCCTCCATTGTTTAGGTTGCAAGGAGTTAACTCTAAGCAGAGAGGTGTTTGGCCACTCCATTGTCCATTGTGTTGGCAATAGCTGTAAACATCACCATTGGTCAAGGTGTATCCAGGGTAACAGGCATATTGAATGTAATGCTTATACTGATGTGGGCCAGGATTCTTTATCGACCGAAAGTAGAATGTTCCGTGAGAAGGAAACGGAGGGTAGGGACACACTGGACGTTTCCTGGTTGGAAATCTTGGAAGATCTTGCCATGCTGGAGGACTAAATGTTTGTTTGGGGTCACTCTGATTGATTCTTTCTTTTACTTGATGATCATCAGTAATGCCAGTGAAGTGGTGGACGCCTGTTGGAGCCTTCAGAAGCAGGCCAGACTTTAGGTGGGAAGCTGTCGTCAAGACCGCCATGCTAGATGATGTATGTTCAATGGGATCTAGTGTTGGAGATGATTCCTGATGGTCTGGTTTTTGTTCACAGAGTTCTCTGCAGGAAGATGGAGCGGTAGACTCTAGATAGGGCGTAGAGGAAACAGACTCATGTTTCAACACCATAAAACCAGGATAGCTTGTTGTTGGAGGTGCAAAACTCTCAGTGGTGGCTGCATATGGATCTTCTGTGATGAAAGTCCTTGACTGTAGAAGGTCATTTGTGCCCAATGTGTTGATGTTTGGTGCAGGTGTAGTTGATGTCCAATGTGAATGATTTTCAATGTATTCTGGTAAATCCTCAGCAGCTGAAGTGACTGAGGCTCTTTGAAATAGTTTGTCTGTACCAAGCGTGGACTCATAACTTTCTATATTTCTATTTCTGTATGGTGTGGCACTAATTGTCTGATCCATGATATTGATTTGCTGAGTGTCCATCACTGGAGTAACGAAGCTGGTTGGAGTGGAGGTTAAAAATGAGGATTCATGAAAAGAACTGGCTAATGAGATTGTGTTGACATCAGTAGGTACAGGTTTCTGAAGATTGGAGTTCCTGATTGGATCCTTGAAGTTCTCAGGGTTGATGATTGGCTCAGCCCTTCCGCTATCTCGTGTTTTGTCAAACAATAGACTCTTTGAGGGCTTTTTCTCTACTGGTTTTCTAATATTTTTCTGCTTGTCATCTGTAAAGTCAAGTCTGATGTGAGGGACCCCAAGCAATGTTGATCTGAGAAAAGCATCCTTGGGAGCAGTGATTGCGAGGGTGTTTAAATGGCTATGTAAGTGAACTTTTAGATTTTTAGGAACATCACGGCCCTGCGCTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU497938 True 1356 lncRNA 0.44 2 5849758 5852399

Neighbor

gene id symbol gene type direction distance location
CI01000306_05760131_05782175 SCML2 coding downstream 67583 5759334 ~ 5782175 (-)
CI01000306_05732360_05733779 NA coding downstream 113910 5731283 ~ 5735848 (-)
CI01000306_05664945_05673274 ACE2 coding downstream 176460 5664945 ~ 5673298 (-)
CI01000306_05631903_05640235 NA coding downstream 209523 5631733 ~ 5640235 (-)
CI01000306_05619706_05631189 PIR coding downstream 218569 5619636 ~ 5631189 (-)
CI01000306_05879886_05883498 NA coding upstream 26339 5878738 ~ 5884232 (-)
CI01000306_05888356_05890267 TMEM169A coding upstream 35670 5888069 ~ 5890366 (-)
CI01000306_05891607_05897232 PECR coding upstream 39174 5891573 ~ 5897325 (-)
CI01000306_05902120_05929983 MAP4K3A coding upstream 49399 5901798 ~ 5929983 (-)
CI01000306_05990444_06033972 NCX, SLC8A1, SLC8A1A, SLC8A1B coding upstream 136854 5989253 ~ 6033972 (-)
G433595 NA non-coding downstream 33889 5758198 ~ 5815869 (-)
G433593 NA non-coding downstream 57527 5788815 ~ 5792231 (-)
G433617 NA non-coding downstream 61687 5787733 ~ 5788071 (-)
G433583 NA non-coding downstream 176107 5673412 ~ 5673651 (-)
G433561 NA non-coding downstream 259195 5567915 ~ 5590563 (-)
G433628 NA non-coding upstream 32804 5885203 ~ 5887132 (-)
G433633 NA non-coding upstream 159260 6011659 ~ 6028057 (-)
G433940 NA non-coding upstream 199406 6051805 ~ 6054634 (-)
G433939 NA non-coding upstream 251440 6103839 ~ 6107564 (-)
G433948 NA non-coding upstream 286278 6138677 ~ 6139696 (-)
G433450 NA other downstream 465995 5361643 ~ 5383763 (-)
CI01000306_04544349_04545034 NA other downstream 1304666 4542723 ~ 4545244 (-)
G432022 NA other downstream 2845867 3000236 ~ 3003891 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 4100808 1717933 ~ 1726043 (-)
G431814 NA other downstream 4537324 1311702 ~ 1312434 (-)
G433670 NA other upstream 188615 6041014 ~ 6041283 (-)
G433985 NA other upstream 343708 6196107 ~ 6197210 (-)
G434016 NA other upstream 502781 6355180 ~ 6361643 (-)
G434086 NA other upstream 585007 6437406 ~ 6452251 (-)
G434338 NA other upstream 1014257 6866656 ~ 6866936 (-)

Expression


Co-expression Network