G432991


Basic Information

Item Value
gene id G432991
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5885200 ~ 5887156 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU497173
ACCGGTGCGTAAGTGTGAAAACAAAACTTTTATCAAGTTCATGCTATAAAAAAAAAAAAACAAAGTTTGTGCTTTGAAACCATGTTTACAGAAAAACAGGCTACTTTGTGCCAGAAGACAATATATAATGTCATTCAAGTGTTCTTGTAGAACAGTTTAAGGCTGAACTAACTGCCAAAAAAAAAAAAAAAAAAGGATCAAGGTCTTGTATTATGAGCGGCATGATGAGTGTTTATTGTAGTCTACAGCATAGCAGTTGGAAAAGTTCCCAAATATAAAGAAAAACCACAAAGAATATCCTGTGCAACAGGTTAAACCTATTAATAATTCTAATTACTCCTTTAAAAAGGCGGTTTACATCAAACTTGCTTATTTGCAGATTTGATACAGTATAATTTAAGAGTTTCTAATACTTGCATATTTTAAAGCAAACAGATTTCTTTCAGATATAAATATTCAACTTTTTAGCAATAGTCATAATTCACATTTCTTTTAACATACTGACTTCAAATTATGCAGATCGGATGCATAGATCTCTGGGAATTTACAGGGTTTGCACACTTTTTATGGGATAAGACTTCACTACAGAAATTTGCATTAATTCTTATAAACTTTCTAATTATTTTAATATTCCCTGACATTTCCATTTTTTCCATGACCGTGGGAACCCTGCATTTAATTATTTTACAATACAACGGTATGCCTCCATAAACAGATAAAGTTATAAATGATGATTGTATACTAAGAGGAGATGAGTACTATAATTCATATCTCCTTGTCAGAGCTGAACTATCTATAGTTGAGTTTTTGCCAAGACACCACCCCATATGTGCAACAATAATCTGTGAATTTCCTGTTAAAAGGTTTTTAAAATTGTAACATGATCTTCTGGGACAACAGAACCATTATCCTTGATGTGTGTGGTTTTTAATGGCTGATATCCTTGGTGAACACTATTATAGCACCATTGTTGTTGCACATGTGAAAATACAAAGCACCACACTGTTAAACACTAACACAACAGTTCAGTGATTTGGGACATACAAACAGAATATTAAAAATAATAATAATAAAAGTATATAAAGTGTAAAATCACAAAGTGTAAAAGTTCATTTGTCTGCTTTGAGTGTAAAATGTTGCTGTAGTGTCTGGTTCAAGTGCAAGTATCGATCAGATAGCTTGAGAACATCACACGAGAGGAAACAGATGCTTATCAGCTGTGTGAAATGTGTGAAATGTGTGAAATGTACAATGCATGACAAAGGTAAATACGTATCATACTTTTAATCACTGAGATGTAACATGATATACGGTCATGACGTTTTCTTTTTAAGGATGTTCGTAGCTACAACTATTTGAACTAACTAGTTTCAGTCTCAGATTCTGCTGTACATAAAAATCGCATTAAAGGTACACAATGGCTCTCTATTGATATCTGTGGCTGAAAACGAAAACAATGTTCCTTTGCATGTAACTTGCAATTGTATTATTTTTTTTCATCAGTTGTGCTCCACTCTTCTGCTCTGATGAATCTGATGGTTTGATATATAGCTATAGTTGCCTTTGATCACCATATCAGAGCAGAACTGACTGATTAAAATCACTGACAGTAAAACTATCCTAACAAGGCATACATCTGGAAAATATGTAGTTTAAGCATGTAAGTAGCATATCTGCCAAACGTTCTTTTCTCTGTGAACATGCAAGGATCCAATCTGGAAGCCTGGAATTTTCAGCCAAATCAAACTTTACTTTACTAACTTACTATAGTGACCATTTTGGGAACATTTATGCAGTTTTATGTATGTACTATGTAAACTTAAATGAGAAAACCTCCCTATTGCACCTTTTAATTAATTAAAGGGTTAGTTCACCCCAAAATGAAAATTATGTCATTAATTACTCATCCTCATGTCGTTCCAGACCCGTAAGACCTTCATTCATCTTCAGAACACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU497173 True 1957 lncRNA 0.33 1 5885200 5887156

Neighbor

gene id symbol gene type direction distance location
CI01000306_05870047_05877183 UGT1B1 coding upstream 8006 5869338 ~ 5877194 (+)
CI01000306_05864099_05864974 NA coding upstream 20226 5864099 ~ 5864974 (+)
CI01000306_05857348_05858295 UGT1B7 coding upstream 25786 5857348 ~ 5859414 (+)
CI01000306_05848803_05855772 NA coding upstream 29327 5848803 ~ 5855873 (+)
CI01000306_05835418_05846769 PPEF1 coding upstream 38241 5835418 ~ 5846959 (+)
CI01000306_05976516_05985251 TMEM178A, TMEM178 coding downstream 88666 5975822 ~ 5986288 (+)
CI01000306_06051975_06053165 TMEM246 coding downstream 164282 6051438 ~ 6054765 (+)
CI01000306_06055478_06066083 NA coding downstream 168322 6055478 ~ 6066413 (+)
CI01000306_06074861_06096200 TTBK1, TTBK1A coding downstream 187705 6074861 ~ 6096287 (+)
CI01000306_06097961_06104051 SLC22A7A coding downstream 210434 6097590 ~ 6104337 (+)
CI01000306_05755968_05757253 NA non-coding upstream 116134 5755779 ~ 5757390 (+)
G432947 NA non-coding upstream 211905 5664915 ~ 5673295 (+)
G433070 NA non-coding upstream 311127 5573601 ~ 5574073 (+)
G433066 NA non-coding upstream 319962 5565027 ~ 5565238 (+)
G433065 NA non-coding upstream 321528 5563418 ~ 5563672 (+)
G433120 NA non-coding downstream 3805 5890961 ~ 5891184 (+)
G432961 NA non-coding downstream 4704 5891860 ~ 5892292 (+)
G433123 NA non-coding downstream 20131 5907287 ~ 5909232 (+)
G433134 NA non-coding downstream 35069 5922225 ~ 5972106 (+)
G433128 NA non-coding downstream 109672 5996828 ~ 6005986 (+)
G432958 NA other upstream 225031 5658928 ~ 5660169 (+)
G432678 NA other upstream 1362664 4522182 ~ 4522536 (+)
G432583 NA other upstream 1557378 4326402 ~ 4327822 (+)
CI01000306_03807268_03810946 NA other upstream 2076202 3807268 ~ 3811243 (+)
CI01000306_03778075_03781910 MAP1LC3A, MAP1LC3A.L other upstream 2102181 3778052 ~ 3783019 (+)
CI01000306_06106248_06107449 GM2573, CS056, WDR83OS other downstream 218987 6106143 ~ 6108175 (+)
G433724 NA other downstream 221455 6108611 ~ 6129778 (+)
G434545 NA other downstream 1232161 7119317 ~ 7119859 (+)
CI01000306_09225597_09230504 NA other downstream 3338409 9225512 ~ 9231333 (+)

Expression


Co-expression Network