G433628


Basic Information

Item Value
gene id G433628
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5885203 ~ 5887132 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU497907
TCTTACGGGTCTGGAACGACATGAGGATGAGTAATTAATGACATAATTTTCATTTTGGGGTGAACTAACCCTTTAATTAATTAAAAGGTGCAATAGGGAGGTTTTCTCATTTAAGTTTACATAGTACATACATAAAACTGCATAAATGTTCCCAAAATGGTCACTATAGTAAGTTAGTAAAGTAAAGTTTGATTTGGCTGAAAATTCCAGGCTTCCAGATTGGATCCTTGCATGTTCACAGAGAAAAGAACGTTTGGCAGATATGCTACTTACATGCTTAAACTACATATTTTCCAGATGTATGCCTTGTTAGGATAGTTTTACTGTCAGTGATTTTAATCAGTCAGTTCTGCTCTGATATGGTGATCAAAGGCAACTATAGCTATATATCAAACCATCAGATTCATCAGAGCAGAAGAGTGGAGCACAACTGATGAAAAAAAATAATACAATTGCAAGTTACATGCAAAGGAACATTGTTTTCGTTTTCAGCCACAGATATCAATAGAGAGCCATTGTGTACCTTTAATGCGATTTTTATGTACAGCAGAATCTGAGACTGAAACTAGTTAGTTCAAATAGTTGTAGCTACGAACATCCTTAAAAAGAAAACGTCATGACCGTATATCATGTTACATCTCAGTGATTAAAAGTATGATACGTATTTACCTTTGTCATGCATTGTACATTTCACACATTTCACACATTTCACACAGCTGATAAGCATCTGTTTCCTCTCGTGTGATGTTCTCAAGCTATCTGATCGATACTTGCACTTGAACCAGACACTACAGCAACATTTTACACTCAAAGCAGACAAATGAACTTTTACACTTTGTGATTTTACACTTTATATACTTTTATTATTATTATTTTTAATATTCTGTTTGTATGTCCCAAATCACTGAACTGTTGTGTTAGTGTTTAACAGTGTGGTGCTTTGTATTTTCACATGTGCAACAACAATGGTGCTATAATAGTGTTCACCAAGGATATCAGCCATTAAAAACCACACACATCAAGGATAATGGTTCTGTTGTCCCAGAAGATCATGTTACAATTTTAAAAACCTTTTAACAGGAAATTCACAGATTATTGTTGCACATATGGGGTGGTGTCTTGGCAAAAACTCAACTATAGATAGTTCAGCTCTGACAAGGAGATATGAATTATAGTACTCATCTCCTCTTAGTATACAATCATCATTTATAACTTTATCTGTTTATGGAGGCATACCGTTGTATTGTAAAATAATTAAATGCAGGGTTCCCACGGTCATGGAAAAAATGGAAATGTCAGGGAATATTAAAATAATTAGAAAGTTTATAAGAATTAATGCAAATTTCTGTAGTGAAGTCTTATCCCATAAAAAGTGTGCAAACCCTGTAAATTCCCAGAGATCTATGCATCCGATCTGCATAATTTGAAGTCAGTATGTTAAAAGAAATGTGAATTATGACTATTGCTAAAAAGTTGAATATTTATATCTGAAAGAAATCTGTTTGCTTTAAAATATGCAAGTATTAGAAACTCTTAAATTATACTGTATCAAATCTGCAAATAAGCAAGTTTGATGTAAACCGCCTTTTTAAAGGAGTAATTAGAATTATTAATAGGTTTAACCTGTTGCACAGGATATTCTTTGTGGTTTTTCTTTATATTTGGGAACTTTTCCAACTGCTATGCTGTAGACTACAATAAACACTCATCATGCCGCTCATAATACAAGACCTTGATCCTTTTTTTTTTTTTTTTTTGGCAGTTAGTTCAGCCTTAAACTGTTCTACAAGAACACTTGAATGACATTATATATTGTCTTCTGGCACAAAGTAGCCTGTTTTTCTGTAAACATGGTTTCAAAGCACAAACTTTGTTTTTTTTTTTTTATAGCATGAACTTGATAAAAGTTTTGTTTTCACACTTACGCACC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU497907 True 1930 lncRNA 0.33 1 5885203 5887132

Neighbor

gene id symbol gene type direction distance location
CI01000306_05879886_05883498 NA coding downstream 971 5878738 ~ 5884232 (-)
CI01000306_05760131_05782175 SCML2 coding downstream 103028 5759334 ~ 5782175 (-)
CI01000306_05732360_05733779 NA coding downstream 149355 5731283 ~ 5735848 (-)
CI01000306_05664945_05673274 ACE2 coding downstream 211905 5664945 ~ 5673298 (-)
CI01000306_05631903_05640235 NA coding downstream 244968 5631733 ~ 5640235 (-)
CI01000306_05888356_05890267 TMEM169A coding upstream 937 5888069 ~ 5890366 (-)
CI01000306_05891607_05897232 PECR coding upstream 4441 5891573 ~ 5897325 (-)
CI01000306_05902120_05929983 MAP4K3A coding upstream 14666 5901798 ~ 5929983 (-)
CI01000306_05990444_06033972 NCX, SLC8A1, SLC8A1A, SLC8A1B coding upstream 102121 5989253 ~ 6033972 (-)
CI01000306_06048083_06049632 NA coding upstream 160707 6047839 ~ 6049632 (-)
G433656 NA non-coding downstream 32804 5849758 ~ 5852399 (-)
G433595 NA non-coding downstream 69334 5758198 ~ 5815869 (-)
G433593 NA non-coding downstream 92972 5788815 ~ 5792231 (-)
G433617 NA non-coding downstream 97132 5787733 ~ 5788071 (-)
G433583 NA non-coding downstream 211552 5673412 ~ 5673651 (-)
G433633 NA non-coding upstream 124527 6011659 ~ 6028057 (-)
G433940 NA non-coding upstream 164673 6051805 ~ 6054634 (-)
G433939 NA non-coding upstream 216707 6103839 ~ 6107564 (-)
G433948 NA non-coding upstream 251545 6138677 ~ 6139696 (-)
G434001 NA non-coding upstream 369873 6257005 ~ 6257347 (-)
G433450 NA other downstream 501440 5361643 ~ 5383763 (-)
CI01000306_04544349_04545034 NA other downstream 1340111 4542723 ~ 4545244 (-)
G432022 NA other downstream 2881312 3000236 ~ 3003891 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 4136253 1717933 ~ 1726043 (-)
G431814 NA other downstream 4572769 1311702 ~ 1312434 (-)
G433670 NA other upstream 153882 6041014 ~ 6041283 (-)
G433985 NA other upstream 308975 6196107 ~ 6197210 (-)
G434016 NA other upstream 468048 6355180 ~ 6361643 (-)
G434086 NA other upstream 550274 6437406 ~ 6452251 (-)
G434338 NA other upstream 979524 6866656 ~ 6866936 (-)

Expression


Co-expression Network